PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma118g00580.1
Common NameZOSMA_118G00580
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 280aa    MW: 30905.5 Da    PI: 6.7872
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma118g00580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47.2e-10122169455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  Zosma118g00580.1 122 SHSLAERVRREKISERMKYLQDLVPGC----DRITGKAGMLDEIINYVQSLQ 169
                       8*************************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-16116183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-10116173No hitNo description
Gene3DG3DSA:4.10.280.102.6E-17118185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624118168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-7122169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-9124174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSWSTVEEML GSLDTTTTTT PHQQQVNLWQ HAMSSGKERS SSSTTGGSNK RKMGNAESCE  60
DYYCSDVANI KKMKGGEQTV SSMNKKMKMK NNKSGKNEEN CSEDWKNNFI HVRARRGQAT  120
DSHSLAERVR REKISERMKY LQDLVPGCDR ITGKAGMLDE IINYVQSLQS QVEFLSMKLA  180
TVNPNVPDFN GNTSFMMSSG GDDTTVCGGG SGLIDTSYLG VNPVDLQQHM LQVSDSFTNT  240
FLDTIIPSPY GGYHHVDQHQ NPHLQGIIAG GYQNLKLET*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199864.15e-50transcription factor bHLH63 isoform X1
TrEMBLA0A0K9Q1Q40.0A0A0K9Q1Q4_ZOSMR; Transcription factor bHLH64
STRINGEMJ010632e-49(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.15e-49cryptochrome-interacting basic-helix-loop-helix 1