PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Zosma118g00550.1

Common Name

ZOSMA_118G00550

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 136aa MW: 15635.9 Da PI: 7.6648

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma118g00550.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.2	3.5e-14	26	75	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h +rRR++iN++f +L++llP + ++K++Ka+iLe+A Y k Lq Zosma118g00550.1 26 NHDCHKQRRREKINTGFKNLQTLLPFsS---MQTKMDKASILEQAYTYTKLLQ 75 6777789*****************55...***************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-15	13	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.954	22	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.8E-14	26	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-11	27	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	27	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.99E-14	32	79	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MEIYSMNDHG IGPSNSFSTD LLQSLNHDCH KQRRREKINT GFKNLQTLLP FSSMQTKMDK 60 ASILEQAYTY TKLLQQQIQM MRFGFSNDQG YKDIMFNSPY LYLQPLELPT NPENLHGLSP 120 MPVVSSGMTM NDFRM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q3Z8	1e-95	A0A0K9Q3Z8_ZOSMR; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma118g00550.1