PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma118g00080.1
Common NameZOSMA_118G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 315aa    MW: 35500.6 Da    PI: 8.2325
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma118g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.92.9e-12173262190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +fY  Y   +GF+vr+ +sk    +  i +++fvCsk+g++ ++ ++     +k +r++ + r +Ck  +k+  +   +w+v+ ++++H+Hel
  Zosma118g00080.1 173 QFYYCYVGYAGFDVRRYSSKLI--DPVIQSKKFVCSKQGESMKKANTdlveCHKINRKSHNVRESCKT-FKIDTD-GINWRVHIFVEHHTHEL 261
                       69***************98887..999**************999999998777888899999****96.688877.899*************9 PP

              FAR1  90 a 90 
                       +
  Zosma118g00080.1 262 V 262
                       7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-8173262IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MFPLKWLETL SVILVKPLSF KPFKPMSSTS PNHCSFNGSN HCFFKGSNHC SSKRSNHYSS  60
DGSNHCSSNG SNHCPSDSPN HYSTDGFNHC SSNSSNHFVD YNLFMPFITL SFTSDILLFH  120
RVAMDDDVHT SISIDSPSRN TNALSIVNSN DTSPPPPIPY VGQIFPDLES DRQFYYCYVG  180
YAGFDVRRYS SKLIDPVIQS KKFVCSKQGE SMKKANTDLV ECHKINRKSH NVRESCKTFK  240
IDTDGINWRV HIFVEHHTHE LVTPRKRHFL CVNRHMSSTS RGLLDSLNSA HIQPSQQYSY  300
AAMDSGGFSN LSYT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q1I00.0A0A0K9Q1I0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-15FAR1-related sequence 5