PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma117g00710.1
Common NameZOSMA_117G00710
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 253aa    MW: 28485.3 Da    PI: 9.1511
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma117g00710.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.48.3e-1753142390
              FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y  Y  ++GF+vr+ ++k +  ++e++ r++ Csk+g++ ++  +   +ek++r+ +  r gC  ++ +++++ ++ w+v ++ ++HnH+l+
  Zosma117g00710.1  53 YMGYTGNIGFNVRMGSTKIN--DQEMVGRRMLCSKQGYAPSTAMAnivNEKKQRRIKFLRSGCLTMIYISLNRfTKLWRVVNFIQDHNHPLV 142
                       999************98887..9999*************99998888888888888899**************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1453142IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MHDTDYKKVQ SQISDQGHIQ SDPNTETIGS SSTPYLPEVG QLFNSHDEAK DAYMGYTGNI  60
GFNVRMGSTK INDQEMVGRR MLCSKQGYAP STAMANIVNE KKQRRIKFLR SGCLTMIYIS  120
LNRFTKLWRV VNFIQDHNHP LVTPSKKRYL LVNRVITPLS GALFQSLNTS NISPSDQYCV  180
AAQEPGGFDH IQFTPSDLSN MRRDDRCNII QRDADLLIEL FEKRKNESDG MWVRKGFPNT  240
SGINICVPKG AV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q1X30.0A0A0K9Q1X3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-16FAR1-related sequence 5