PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma116g00640.1 | ||||||||
Common Name | ZOSMA_116G00640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 252aa MW: 29135 Da PI: 8.8968 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 66.2 | 6.9e-21 | 30 | 113 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ +Li a+++m+ +lrrg lk ++W+ev++ + ++ g+ +r+ +qC++k+e+l+kry+ ++ ++ +s+s ++++dq+e Zosma116g00640.1 30 WSEHETSHLIGAYQDMWYSLRRGPLKSHQWDEVAASLsSRCGYgSRTGTQCRHKMEKLRKRYRIERGKLSS---NSRSYWVHYDQME 113 *************************************7667888********************9999987...56779*******7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 2.0E-19 | 28 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-4 | 28 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.76 | 30 | 88 | IPR017877 | Myb-like domain |
SMART | SM00595 | 4.9E-5 | 37 | 120 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 252 aa Download sequence Send to blast |
MASSSDPQHP VSTLNPVPRP KKNSPPGQAW SEHETSHLIG AYQDMWYSLR RGPLKSHQWD 60 EVAASLSSRC GYGSRTGTQC RHKMEKLRKR YRIERGKLSS NSRSYWVHYD QMELMESGPH 120 PISVCPPVIP VCPPKAQVEV FDNEDEEDDE NESEEDMIRT KERVAWKSNN VDCNYESVRA 180 AKKLVSVVKR FAEGLYRIEK RKMDMMTELE RDWMDMELKR QDMWMRSGNY LANKISSAFR 240 SSKKAKKASD I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9Q253 | 0.0 | A0A0K9Q253_ZOSMR; Putative Transcription factor |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G44730.1 | 5e-23 | Trihelix family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma116g00640.1 |