PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma116g00430.1

Common Name

ZOSMA_116G00430

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 755aa MW: 85820.7 Da PI: 6.0151

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma116g00430.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.8	1.3e-21	111	199	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA+++GF r+ +s++sk ++ ++++fvCskeg +++ + + ++r+r + r gCka ++v ++ +++w v+kle+ H+H l Zosma116g00430.1 111 NFYNDYARRLGFPFRVGRSRRSKGvQEVLIMKRFVCSKEGIYRKKVSGEGVRKRERISMREGCKAFMEVIRD-KDRWIVSKLETAHTHVL 199 6*******************761556799**********999999**************999.9************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-17	111	199	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.9E-28	292	383	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.536	575	611	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-9	575	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-6	586	613	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MFGNSTFQKL MEGSRTEGDD LIEDYVECLM SLETNSRPGD DGHTTNNTTL VVQGEIPVTT 60 DGMPVKIPSE MMMIMQNNND KDIILHGNAG EEVKLEPVCG MEFESDESAK NFYNDYARRL 120 GFPFRVGRSR RSKGVQEVLI MKRFVCSKEG IYRKKVSGEG VRKRERISMR EGCKAFMEVI 180 RDKDRWIVSK LETAHTHVLG TCSRAGYLRA RGFIDTSEKA TIVASDATTL LRQNAFGEGG 240 DAQGLLDYFK KSQADNPSFF YAVQVDNNSC VTNAFWADAK ARVTYNNFGE AVTFDTTYKK 300 NKYMMPFVTF SGINHHLQPV IFGCALLIDE TEFSFIWLFE TWLAAMGGRA PISLTSDQNR 360 AMASAIAKVF PNTRHRFCKW LILSRTKQKL AHAYAAHPNL REELEKCVVE SKTIRSFETT 420 WVGIIDKYDL RKNPWLQALF NIRNLWIPLY LADTFFADLS PLQKLETVND LYKKYFNTKT 480 SLKVFLTQFE LAMAGRYDNE IQADNEMWCD AIKPLLKTAS PIEKQASEVY TLAAFQKFQE 540 EFLESLGYNA FKIKDQPPIT KYNVVKDEED SLDAYIVTLD MSRRMATCSC NKFEFGGILC 600 RHILGVFLMI DLHVIPEEYI LRRWTKNAKN GLLQDEFVED IQNPFLSQSS NVTRYNDLCR 660 DAIRLSDKGS SSVELYKITK EALQKAFAEI VAAEKNVAVS CAEQHDTINI NEDISIDEAT 720 ATATTDQGSL QDPQRKLQAT NLFGQFLEPN WTPI*

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MFGNSTFQKL MEGSRTEGDD LIEDYVECLM SLETNSRPGD DGHTTNNTTL VVQGEIPVTT  60
DGMPVKIPSE MMMIMQNNND KDIILHGNAG EEVKLEPVCG MEFESDESAK NFYNDYARRL  120
GFPFRVGRSR RSKGVQEVLI MKRFVCSKEG IYRKKVSGEG VRKRERISMR EGCKAFMEVI  180
RDKDRWIVSK LETAHTHVLG TCSRAGYLRA RGFIDTSEKA TIVASDATTL LRQNAFGEGG  240
DAQGLLDYFK KSQADNPSFF YAVQVDNNSC VTNAFWADAK ARVTYNNFGE AVTFDTTYKK  300
NKYMMPFVTF SGINHHLQPV IFGCALLIDE TEFSFIWLFE TWLAAMGGRA PISLTSDQNR  360
AMASAIAKVF PNTRHRFCKW LILSRTKQKL AHAYAAHPNL REELEKCVVE SKTIRSFETT  420
WVGIIDKYDL RKNPWLQALF NIRNLWIPLY LADTFFADLS PLQKLETVND LYKKYFNTKT  480
SLKVFLTQFE LAMAGRYDNE IQADNEMWCD AIKPLLKTAS PIEKQASEVY TLAAFQKFQE  540
EFLESLGYNA FKIKDQPPIT KYNVVKDEED SLDAYIVTLD MSRRMATCSC NKFEFGGILC  600
RHILGVFLMI DLHVIPEEYI LRRWTKNAKN GLLQDEFVED IQNPFLSQSS NVTRYNDLCR  660
DAIRLSDKGS SSVELYKITK EALQKAFAEI VAAEKNVAVS CAEQHDTINI NEDISIDEAT  720
ATATTDQGSL QDPQRKLQAT NLFGQFLEPN WTPI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008785346.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659332.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659336.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659343.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659346.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659349.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659352.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_026659354.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0K9Q4C4	0.0	A0A0K9Q4C4_ZOSMR; FAR1-related sequence 5
STRING	XP_008785341.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-158	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma116g00430.1