PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma116g00430.1
Common NameZOSMA_116G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 755aa    MW: 85820.7 Da    PI: 6.0151
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma116g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.81.3e-21111199189
              FAR1   1 kfYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                       +fYn+YA+++GF  r+ +s++sk  ++  ++++fvCskeg  +++ + +  ++r+r + r gCka ++v ++ +++w v+kle+ H+H l
  Zosma116g00430.1 111 NFYNDYARRLGFPFRVGRSRRSKGvQEVLIMKRFVCSKEGIYRKKVSGEGVRKRERISMREGCKAFMEVIRD-KDRWIVSKLETAHTHVL 199
                       6*********************761556799**************999999******************999.9**************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-17111199IPR004330FAR1 DNA binding domain
PfamPF105512.9E-28292383IPR018289MULE transposase domain
PROSITE profilePS5096611.536575611IPR007527Zinc finger, SWIM-type
PfamPF044342.9E-9575610IPR007527Zinc finger, SWIM-type
SMARTSM005752.8E-6586613IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MFGNSTFQKL MEGSRTEGDD LIEDYVECLM SLETNSRPGD DGHTTNNTTL VVQGEIPVTT  60
DGMPVKIPSE MMMIMQNNND KDIILHGNAG EEVKLEPVCG MEFESDESAK NFYNDYARRL  120
GFPFRVGRSR RSKGVQEVLI MKRFVCSKEG IYRKKVSGEG VRKRERISMR EGCKAFMEVI  180
RDKDRWIVSK LETAHTHVLG TCSRAGYLRA RGFIDTSEKA TIVASDATTL LRQNAFGEGG  240
DAQGLLDYFK KSQADNPSFF YAVQVDNNSC VTNAFWADAK ARVTYNNFGE AVTFDTTYKK  300
NKYMMPFVTF SGINHHLQPV IFGCALLIDE TEFSFIWLFE TWLAAMGGRA PISLTSDQNR  360
AMASAIAKVF PNTRHRFCKW LILSRTKQKL AHAYAAHPNL REELEKCVVE SKTIRSFETT  420
WVGIIDKYDL RKNPWLQALF NIRNLWIPLY LADTFFADLS PLQKLETVND LYKKYFNTKT  480
SLKVFLTQFE LAMAGRYDNE IQADNEMWCD AIKPLLKTAS PIEKQASEVY TLAAFQKFQE  540
EFLESLGYNA FKIKDQPPIT KYNVVKDEED SLDAYIVTLD MSRRMATCSC NKFEFGGILC  600
RHILGVFLMI DLHVIPEEYI LRRWTKNAKN GLLQDEFVED IQNPFLSQSS NVTRYNDLCR  660
DAIRLSDKGS SSVELYKITK EALQKAFAEI VAAEKNVAVS CAEQHDTINI NEDISIDEAT  720
ATATTDQGSL QDPQRKLQAT NLFGQFLEPN WTPI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008785346.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659332.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659336.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659343.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659346.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659349.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659352.10.0protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_026659354.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0K9Q4C40.0A0A0K9Q4C4_ZOSMR; FAR1-related sequence 5
STRINGXP_008785341.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-158FAR1-related sequence 5