PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma114g01110.1
Common NameZOSMA_114G01110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 549aa    MW: 62152.5 Da    PI: 4.8238
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma114g01110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.68.1e-4351322129
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        pG+rF+Ptd+elv++yLk+k+ gkkl + + i+evdiy+++P+dLp k + ++++  wyfF++++ ++++++r++rat+ g+Wk+tg dk+v
  Zosma114g01110.1   5 LPGYRFSPTDDELVMFYLKRKIMGKKLLT-RPIAEVDIYNYHPRDLPgKsSSTTNDLVWYFFCPSHIQNTSSRRRSRATDGGFWKTTGVDKPV 96 
                       59************************888.78***************43233334459*********************************** PP

               NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       ++ +++ vg +k+Lvf++grapk+e+tdWv+he+rle
  Zosma114g01110.1  97 YH-DSRIVGKRKSLVFHNGRAPKAERTDWVIHEFRLE 132
                       **.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-503153IPR003441NAC domain
PROSITE profilePS5100549.2684153IPR003441NAC domain
PfamPF023657.1E-236131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MVYHLPGYRF SPTDDELVMF YLKRKIMGKK LLTRPIAEVD IYNYHPRDLP GKSSSTTNDL  60
VWYFFCPSHI QNTSSRRRSR ATDGGFWKTT GVDKPVYHDS RIVGKRKSLV FHNGRAPKAE  120
RTDWVIHEFR LEDPLADPNF SQNSYVICKL FEKSGPGPKI AEKHGAPFKE EDWDDDDNVG  180
IDNNSADLIS SVSSSERHHD RDRDHDLQSS FHPKDSINIG NNQNSLNSFQ FGPQEPPAVL  240
GIERTLFHID SEIPVPILSQ EPDQLNQSSL QNPAFDLMDS QTEGGNQYTP NGFCGPVELS  300
NYLNTSRSLL YTDSALPVPV LYPELQNNHS SLQNPSFYPM DSRTAGNYNS TNSFNFGSLD  360
LSNYLGTEIH VDSSVPDPIL YPELQHDQSF HQNIDASENY LDDHDLDMLL YDDPQTFGDC  420
FTSNMDNFFT IENPLDCREQ KLTSGFHIEN ETAMHQNLME TSSYIEMNDL QHLMGNFYSE  480
FTPPPIPTAV SYASRTYDEQ HIRNNHSRPF TTGASSSLSN INISEKAMTN GMNTTAGALM  540
FQPKGYNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-34615317168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q2L20.0A0A0K9Q2L2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.41e-61NAC domain containing protein 82