PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma113g00480.1
Common NameZOSMA_113G00480
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 412aa    MW: 45873.6 Da    PI: 9.3329
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma113g00480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-09214261455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Zosma113g00480.1 214 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 261
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.07E-11208265No hitNo description
SuperFamilySSF474591.83E-17208279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663210260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-17210278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-6214261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEKSRIYVTD PRLNSYRNST LPAQDGFLSF NWETAQPKVN YFGHFHPISG NPLPPPPQIV  60
PNAATGYAYI GNDQTGNGLL GEFLFPAVTG GKVPNVNVIP SPQVLMSSPQ DSNPTTNTQI  120
SDESYTMKRK AISMGKVEEE SSMSPQLSND HKKIIYHCND NRKTDGGAAN LKKKSPIKKS  180
KSDSNSAEKG KEVNSPPKQD FIHVRARRGQ ATDSHSLAER VRREKISERM KFLQDLVPGC  240
NKVTGKAVML DEIINYVQSL QQQVEFLSMK LATVNPQLDF NMENVLQKQI RQLRASLQLS  300
QLDYPHLNPN IPHTFPPQQS QQSSPQQSAN NLHGFLLEEN NSSHVNPSGS NLRSTLKNPI  360
SEGFPDSSPQ VGNLWEDDLQ SVVQMGFFQN LDKKSNQVPY PPSEQKILQK L*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022761805.12e-71transcription factor bHLH62-like
SwissprotQ9CAA91e-59BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0K9Q5190.0A0A0K9Q519_ZOSMR; Transcription factor bHLH77
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]