PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma113g00340.1
Common NameZOSMA_113G00340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GRAS
Protein Properties Length: 767aa    MW: 83539.4 Da    PI: 6.4668
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma113g00340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.95.8e-1264077642374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        +lLl+cAeavs+++le+a+++L ++sel++p+g++ qR+aayf eA++arl++s+ ++y+ lp  +    ++++ +aa+++f+ +sP++kfs
  Zosma113g00340.1 407 LTLLLQCAEAVSADNLEEANKILLEISELSTPYGTSAQRVAAYFSEAMSARLVSSCLGIYAPLPLLHRW--QTQKLAAAFQVFNGISPFIKFS 497
                       579*********************************************************999887776..57889999************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       h+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfef + +++++ 
  Zosma113g00340.1 498 HFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPLVRLTGLGT----SMEALEATGKRLTDFAETLGLPFEFCP-LMEKVG 585
                       *******************************************************....***************************.5999** PP

              GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                       +l++e+L+v+++Ea+aV++ +  h+l+d ++s ++    +L+l+++l+Pkvv++veq+++  ++sFl rf+ea++yysalfdsl a+++++s+
  Zosma113g00340.1 586 NLDVEKLNVSKREAVAVHWLH--HSLYDVTGSDTN----TLWLLQRLRPKVVTIVEQDLSQ-AGSFLGRFVEAIHYYSALFDSLGASYAEDSN 671
                       ********************9..999999999999....********************98.899**************************** PP

              GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       er++vE++ll+rei+nv+a  g  r+ + + + +Wre+l ++GF++++l+ +aa+qa+lll +++ dgy++ ee+g+l lgWkd  L+++SaW
  Zosma113g00340.1 672 ERHVVEQQLLAREIRNVLAVGGPGRTGEVK-FLNWREKLCQSGFRSISLGGNAATQASLLLGMFPCDGYTLVEENGTLKLGWKDLCLLTASAW 763
                       ************************998887.99************************************************************ PP

              GRAS 374 r 374
                       r
  Zosma113g00340.1 764 R 764
                       8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.263380744IPR005202Transcription factor GRAS
PfamPF035142.0E-123407764IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MASPSSCLLL PSHYYYDPTT IYTNNNNNNP SDTPPPYPLP PPPPPLHFFQ PAREINNPPP  60
MTRKRPASDL DLQSDERSSY PRRSQSGDLQ GGTGAGMPHG IITHAHSSVN NNRSPSSSSS  120
NLQPLPSALP LAPPPSYGFS GLPMFASEGN ESFPAGVGAS PTTAAPLVTT GFSDDANISG  180
VVATAWIDEI IRDLISNSSP DVSVPQLILN VREIIQPYNP NLAAVLEYRL RSLIADSTPP  240
PPPPPPLLPQ PLPLPLSLPP PVLPHSSENY PTSMASTNIE GSDKRGRESL SSRPPRYLQQ  300
SPLPTTVQQS NKRISDRHCN FRSNPPSQGT QFVNWDEPQP VQIQPRLPTT TTTTTTTTTT  360
TQSSKQSKTA TAKSEEAAIA AAIALARNQK SDEIRKKKRD EEGLHLLTLL LQCAEAVSAD  420
NLEEANKILL EISELSTPYG TSAQRVAAYF SEAMSARLVS SCLGIYAPLP LLHRWQTQKL  480
AAAFQVFNGI SPFIKFSHFT ANQAIQEAFE REDRVHIIDL DIMQGLQWPG LFHILASRPG  540
GPPLVRLTGL GTSMEALEAT GKRLTDFAET LGLPFEFCPL MEKVGNLDVE KLNVSKREAV  600
AVHWLHHSLY DVTGSDTNTL WLLQRLRPKV VTIVEQDLSQ AGSFLGRFVE AIHYYSALFD  660
SLGASYAEDS NERHVVEQQL LAREIRNVLA VGGPGRTGEV KFLNWREKLC QSGFRSISLG  720
GNAATQASLL LGMFPCDGYT LVEENGTLKL GWKDLCLLTA SAWRPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.03907653380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090957.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A0K9Q4V20.0A0A0K9Q4V2_ZOSMR; Protein SCARECROW
STRINGcassava4.1_001737m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein