PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma113g00030.1
Common NameZOSMA_113G00030
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 892aa    MW: 99098.6 Da    PI: 9.0638
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma113g00030.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.62.9e-22799879186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W+ +ev++Li++r e+e+++++ k ++ lWee+s++++ +g+ersp qCk+ w++l ++yk+ ++ ek +      t+pyf+ ++
  Zosma113g00030.1 799 KWKPKEVKKLIKMRGELENTFKTVKGRMILWEEISIFLMNHGIERSPAQCKSLWSSLVQKYKESQNDEKIQ-----ITWPYFEAMH 879
                       7***************************************************************9999973.....58*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.60.15.101.3E-6789339IPR001279Metallo-beta-lactamase
SuperFamilySSF562811.92E-7390504IPR001279Metallo-beta-lactamase
SMARTSM008491.3E-23102299IPR001279Metallo-beta-lactamase
PfamPF127063.2E-10114249IPR001279Metallo-beta-lactamase
PfamPF075215.9E-8443476IPR011108Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE profilePS500907.259792856IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-4794858IPR009057Homeodomain-like
PfamPF138373.1E-15797879No hitNo description
CDDcd122035.79E-15808862No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009942Biological Processlongitudinal axis specification
GO:0060918Biological Processauxin transport
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MMVSLTSIPH ICPCRRLARR PVVLRSSSVS ISTSSSIFSS VAPPSISNGD RRSRTPRRRT  60
RKIDGPQKSM EDSVKRKMEQ FYEGSDGPPL RVIPIGGLGE IGMNCMLVGN YDRYILVDAG  120
IMFPDFDELG VQKIIPDTTF IKRWSHKIEA IVITHGHEDH IGALPWVIPA LDSNTPIFAS  180
SFTMQLIKRR LKEFGIFVHS RLKVFNVRKK FVAGPFEIEP IRVTHSIPDC SGLVLRCDDG  240
TILHTGDWKI DESPLDGKSF DRETLEQLSK EGVTLMMSDS TNVLSPGRSV SETVVADSLL  300
RNISACKGRV ITTQFASNIH RLGSVKAAAD ATGRKLVFVG MSLRTYLEAA FKDGKAPMDP  360
STLVKIEDID AYAPKDLLIV TTGSQAEPRA ALNLASFGSS HSLKLGKDDV ILYSAKVIPG  420
NETRVMKMLN RVTDLGSTIV MGKNEFLHTS GHAYYDELDE VLKIVKPQHF LPIHGELLFL  480
KEHELLGKST GIQHTTVIKN GEMLGVSHLR NRRVLSNGFV SLGKESFQLM YSDGDKAFGT  540
SAELRIDERL RIASDGIVVV SMEINRPQNG DNVSETCIKG KIRITTRCLW LDKGKVLDAL  600
HKAANTALSS CHINSPLSHI ERTVSEVLRK MVRKYSSKRP EVIAVAIENT IGILAEELRT  660
RLSGESEKSD VGSDLQMTNQ GSVKSVKNPK KKSNKDLSEN ASNDTTNTDV YADDTQVQLL  720
PEDDMVSNSE LESVSSKSNN FWESFMLPSA AEIIRNESSS GVRGDLKDDK YKKNTSNGLP  780
DLLSTSSQVE TSKPAKRKKW KPKEVKKLIK MRGELENTFK TVKGRMILWE EISIFLMNHG  840
IERSPAQCKS LWSSLVQKYK ESQNDEKIQI TWPYFEAMHG VLSMDDEDAT K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3bk1_A2e-87856499562Metal dependent hydrolase
3bk2_A2e-87856499562Metal dependent hydrolase
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250|UniProtKB:Q72JJ7, ECO:0000269|PubMed:15266054, ECO:0000269|PubMed:22033332, ECO:0000269|PubMed:25871650}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:25871650}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104743.10.0uncharacterized protein LOC109721501 isoform X1
SwissprotQ84W560.0RNJ_ARATH; Ribonuclease J
TrEMBLA0A0K9Q2U00.0A0A0K9Q2U0_ZOSMR; Metallo-beta-lactamase family protein
STRINGXP_008811801.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49963542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein
Publications ? help Back to Top
  1. Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D
    Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
    Plant Physiol., 2011. 155(4): p. 1678-89
    [PMID:21139083]
  2. Halpert M,Liveanu V,Glaser F,Schuster G
    The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities.
    Plant Mol. Biol., 2019. 99(1-2): p. 17-29
    [PMID:30511330]