PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma112g00390.1 | ||||||||
Common Name | ZOSMA_112G00390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | Dof | ||||||||
Protein Properties | Length: 200aa MW: 22112 Da PI: 8.5637 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.5 | 4.1e-40 | 14 | 73 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++lkcprCds ntkfCyynnyslsqPryfCkaCrryWt+GG+lrn+P+Ggg+rknk+ s Zosma112g00390.1 14 ADQLKCPRCDSINTKFCYYNNYSLSQPRYFCKACRRYWTHGGSLRNIPIGGGCRKNKRFS 73 6789*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-27 | 8 | 71 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.2E-34 | 16 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.385 | 17 | 71 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 19 | 55 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MKMETAKKVG KQQADQLKCP RCDSINTKFC YYNNYSLSQP RYFCKACRRY WTHGGSLRNI 60 PIGGGCRKNK RFSSSSSSSK KFLAHQTAHL GLSSLLEISN VNANNMSVST AGLPTFFDLL 120 MGGFLESSNN NNNYTAGIPD WYPLVQQEQQ QQQLVSPFEA MPAAAIDEEI WRNVTMEGGS 180 LDLLGRDCCI GSSLHSLFG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007210227.1 | 4e-36 | dof zinc finger protein DOF5.6 | ||||
Refseq | XP_021825960.1 | 4e-36 | dof zinc finger protein DOF5.6 | ||||
Swissprot | O24463 | 6e-35 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A0K9Q301 | 1e-148 | A0A0K9Q301_ZOSMR; Dof zinc finger protein DOF1.7 | ||||
STRING | EMJ11426 | 2e-35 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 1e-34 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Zosma112g00390.1 |
Publications ? help Back to Top | |||
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