PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma112g00240.1
Common NameZOSMA_112G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 263aa    MW: 29925.1 Da    PI: 9.2487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma112g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-05115134120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C+ C k+Fsr  n++ H+
  Zosma112g00240.1 115 FSCHLCLKTFSRYNNMQMHM 134
                       89*****************9 PP
2zf-C2H2157.2e-05199221123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk F  + + ++H +++
  Zosma112g00240.1 199 FSCERCGKAFAVRGDWRTHEKNC 221
                       89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003554.5115137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4115134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743115142IPR007087Zinc finger, C2H2
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SMARTSM00355270161194IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.97E-7184219No hitNo description
Gene3DG3DSA:3.30.160.601.8E-6185219IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035561199219IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.016199219IPR007087Zinc finger, C2H2
SMARTSM00355120225248IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MFNGYYNQLP LISSDVHRSP VPNNHHNRSI YNYTTPASPP PASPPLRVAL PLLNLSPGRT  60
DSLREVIPEA DTGEVTVSLH IGLLPPSPPP PPDDDRKEQY WIPSPSQILI GPTQFSCHLC  120
LKTFSRYNNM QMHMWGHGSQ YRKGPESLRG TQPTAMLRLP CYCCESGCRN NIDHPRSKPL  180
KDFRTLQTHY KRKHGVKPFS CERCGKAFAV RGDWRTHEKN CGKFWYCICG SDFKHKRSLK  240
DHIRGFGHGH GPIDVDNYFM NY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850176.11e-116zinc finger protein WIP2
SwissprotQ8W0311e-108ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLA0A0K9Q3800.0A0A0K9Q380_ZOSMR; Zinc finger-like protein
STRINGERN117571e-115(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-106C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]