PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma110g00150.1
Common NameZOSMA_110G00150
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 387aa    MW: 42007.9 Da    PI: 6.6281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma110g00150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.7e-06263303954
                       HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        r RR++i +++  L++l+P       +K++ a++L +A +Y+k L
  Zosma110g00150.1 263 ARHRREKISERLRVLQKLVPGG-----TKMDTASMLDEAGNYLKFL 303
                       599*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.456254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.8E-10260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.11E-8260307No hitNo description
SuperFamilySSF474591.18E-11260308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-10262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MDRLGVDNQL PALPGNDGMG YCCVRNSSGG AADQGGIGGG GGFFFGENSM KIINSTSSSD  60
FGRLQDEIME EQLSLFHNGQ DDLWLQELKN TSTTSTINII PTTTTTTTMG VPVQDLMMPP  120
SSNGTILIQH LGSRYEDDDG ISGFCGWEAE NYGAISSKRK EIGGGSVLME KKPRLMNNPN  180
VSSCNIDFRQ GGGSGDRRRR RHQQHLLHPN RDDESDAEAI AHVKEMIYRA AALRPVSLGT  240
EIAVEKPKRR NVKISSDPQT VAARHRREKI SERLRVLQKL VPGGTKMDTA SMLDEAGNYL  300
KFLKSQVIAL ENVGKDMIYS PVAAATAVAA NNNNNNITSS SSSASPHSIN IIPPPYSFSH  360
ALADDASFIT VDDQTLFHDH RSHHCH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9Q3530.0A0A0K9Q353_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-48bHLH family protein