PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zosma110g00040.1

Common Name

ZOSMA_110G00040

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 433aa MW: 48889.4 Da PI: 8.167

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma110g00040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	63	8.9e-20	182	274	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA+++GFsvr +++++ + +++ ++r++ Cskeg + + + +rr++a++r+gC a++k+k+e +++w v++++leHnH+l+ Zosma110g00040.1 182 YYGYASKMGFSVRLGSTNYKtskdDGKKNLVMRRLLCSKEGIVDLLHPPKLGKRRKNAVSRCGCCASIKIKREAmSEVWIVKNIVLEHNHHLT 274 899********9876655454444567899*******999988899******************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.7E-17	182	274	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-6	396	431	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MSLNSLNVID QLSPLQQPNI EPQNTIHFSP NSSSIYITPH PYHPLHAQPL IPPTQHSRPQ 60 CNVSLDFYSI KTEKPSDCNP NETYGNVQFS RINDFPLVPD ANYVPHQYHD TPLDNLHTPI 120 SSENNDVTGL PIVTTSSVNA SLSFFIPKQP TDTNSSSDNV KLNSPPTFGQ IYSSYSDALD 180 QYYGYASKMG FSVRLGSTNY KTSKDDGKKN LVMRRLLCSK EGIVDLLHPP KLGKRRKNAV 240 SRCGCCASIK IKREAMSEVW IVKNIVLEHN HHLTTSSKVR FLPIDRSISF TSRLLFQSLS 300 EVNVPVSQQT AYFSTQVGGI EHMGCTQLDI SNMCHNDRVD LKNYDVDLLV EKFEMKKSVQ 360 PDFFYSIVKD SSDRLKHVFW ADSIMIQHFK LFGDTVTFDT TYKTNVYSLI FGMFCGVNHH 420 RKTVIFGSAF LR*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MSLNSLNVID QLSPLQQPNI EPQNTIHFSP NSSSIYITPH PYHPLHAQPL IPPTQHSRPQ  60
CNVSLDFYSI KTEKPSDCNP NETYGNVQFS RINDFPLVPD ANYVPHQYHD TPLDNLHTPI  120
SSENNDVTGL PIVTTSSVNA SLSFFIPKQP TDTNSSSDNV KLNSPPTFGQ IYSSYSDALD  180
QYYGYASKMG FSVRLGSTNY KTSKDDGKKN LVMRRLLCSK EGIVDLLHPP KLGKRRKNAV  240
SRCGCCASIK IKREAMSEVW IVKNIVLEHN HHLTTSSKVR FLPIDRSISF TSRLLFQSLS  300
EVNVPVSQQT AYFSTQVGGI EHMGCTQLDI SNMCHNDRVD LKNYDVDLLV EKFEMKKSVQ  360
PDFFYSIVKD SSDRLKHVFW ADSIMIQHFK LFGDTVTFDT TYKTNVYSLI FGMFCGVNHH  420
RKTVIFGSAF LR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	229	235	PKLGKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q354	0.0	A0A0K9Q354_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-38	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma110g00040.1