PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma10g01010.1

Common Name

ZOSMA_10G01010

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 167aa MW: 18590.7 Da PI: 10.2999

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma10g01010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.6	4.2e-18	21	113	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA++ GFsvr ++++ + ++ ++r++ Csk gk + + +rr++a++r+gC a++k+k+e ++kw v+++ leHnH+l+ Zosma10g01010.1 21 YYGYASKDGFSVRLGFTNYNtskvDGKKLLVMRRLLCSKLGKVGLLHPIKLGKRRKNAVSRCGCCASIKIKREAmSEKWIVKNIILEHNHPLT 113 899********8755554443345566899******9998888899*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.7E-15	21	113	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MNSPPFVGQI FSSYSDALDQ YYGYASKDGF SVRLGFTNYN TSKVDGKKLL VMRRLLCSKL 60 GKVGLLHPIK LGKRRKNAVS RCGCCASIKI KREAMSEKWI VKNIILEHNH PLTTPSKVQF 120 LPINRSISST SILLFNSLSE VVNVPVSQQT AYFSSQVGEI EHMRCT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9Q3H3	1e-120	A0A0K9Q3H3_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	2e-18	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Zosma10g01010.1