PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma106g00660.1
Common NameZOSMA_106G00660
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 41aa    MW: 4682.56 Da    PI: 9.3384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma106g00660.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.11e-053371855
                      HHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH 18 safeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                      +++  L++l+P +    +kK   Ka +L + ++Y++sLq
  Zosma106g00660.1  3 ERMKFLQDLVPGC----NKKvTGKAVMLDEIIHYVQSLQ 37
                      667779*******....6676*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.461136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-9139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-9139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 41 aa     Download sequence    Send to blast
MSERMKFLQD LVPGCNKKVT GKAVMLDEII HYVQSLQRQF *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010542232.17e-17PREDICTED: transcription factor bHLH49-like, partial
RefseqXP_020422344.19e-17transcription factor bHLH49 isoform X1
RefseqXP_020422348.19e-17transcription factor bHLH49 isoform X1
RefseqXP_020422352.19e-17transcription factor bHLH49 isoform X3
RefseqXP_020422357.19e-17transcription factor bHLH49 isoform X4
SwissprotQ9CAA93e-17BH049_ARATH; Transcription factor bHLH49
TrEMBLA0A0K9Q6382e-21A0A0K9Q638_ZOSMR; Uncharacterized protein
STRINGEMT204213e-15(Aegilops tauschii)
STRINGTRIUR3_13053-P14e-15(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-19bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]