PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma105g00480.1
Common NameZOSMA_105G00480
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ZF-HD
Protein Properties Length: 294aa    MW: 32253.3 Da    PI: 8.5773
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma105g00480.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1031.9e-3276132360
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                        v+Y+eClkNhAas+Gg+a+DGCgEfmps geegt++alkC+AC+CHRnFHRreve e
  Zosma105g00480.1  76 LVKYRECLKNHAASIGGNATDGCGEFMPS-GEEGTMEALKCSACNCHRNFHRREVEGE 132
                       589*************************9.999*********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2377132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.7E-3077129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.7E-3178129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.3379128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.8E-29209281IPR009057Homeodomain-like
SuperFamilySSF466891.32E-18211279IPR009057Homeodomain-like
TIGRFAMsTIGR015654.0E-25220276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDLSSHEGDI PIPTPIPTPI PIKYVVDPTP NSPNTTGTGI VENHDSITCY RNAPPSSGGG  60
GGDGGGNEIN KKGVCLVKYR ECLKNHAASI GGNATDGCGE FMPSGEEGTM EALKCSACNC  120
HRNFHRREVE GESSSFELLY QNRHQHQHGG GFKGRKILGK KGVLISGSNT DPFMYRNSGH  180
NSLIPMPSPH HMIMPLGAMQ TSDQSDEMEG VGGGFSRPMK KRFRTKFTQD QKDKMLSFAE  240
SSGWRLQKQE ESVVQQFCQE IGVRRRVLKV WMHNNKHNLQ TKKDVSTINN QLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-232212781875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421143.11e-103PREDICTED: zinc-finger homeodomain protein 4-like
SwissprotO647223e-74ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A0K9Q4L70.0A0A0K9Q4L7_ZOSMR; Zinc finger-homeodomain protein 1
STRINGXP_008808961.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-70homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]