PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc12571.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 221aa MW: 24044.7 Da PI: 7.0701 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 234 | 6.5e-72 | 1 | 220 | 19 | 243 |
GRAS 19 laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshlt 97 +a+ +Larl +asp+g +pm+R+aayf+eALa r++r++++l++ pp+e ++ ++ + al++++ ++Pi++f h+t Zmw_sc12571.1.g00010.1.am.mk 1 AANYYLARLGMIASPAGpTPMHRVAAYFAEALAIRVVRTWPHLFDVTPPRELTDGAvGDDDAVALRVLNAITPIPRFLHFT 81 5899***********************************************998887899999****************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 N+ +l+a++g++rvH+iDfdi+qGlQWp Llq+La+R+++p ++RiTgvg+ sk+el+ tg rL ++A++lg+ fef Zmw_sc12571.1.g00010.1.am.mk 82 INERLLRAFDGHDRVHVIDFDIKQGLQWPGLLQSLAARANPPSHVRITGVGE----SKQELQDTGARLGHVAASLGLAFEF 158 ****************************************************....************************* PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvve 243 ++ v++rled++l++L+vk gE++aVn+vl++hrll ++ ++ ++L l +s+ + ++ + e Zmw_sc12571.1.g00010.1.am.mk 159 HA-VVDRLEDVRLWMLHVKGGECVAVNCVLAVHRLLCNENGTA--LADFLGLARSTGAAILLLGE 220 **.7*******************************95544444..589************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 2.3E-69 | 1 | 220 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 39.509 | 1 | 221 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
AANYYLARLG MIASPAGPTP MHRVAAYFAE ALAIRVVRTW PHLFDVTPPR ELTDGAVGDD 60 DAVALRVLNA ITPIPRFLHF TINERLLRAF DGHDRVHVID FDIKQGLQWP GLLQSLAARA 120 NPPSHVRITG VGESKQELQD TGARLGHVAA SLGLAFEFHA VVDRLEDVRL WMLHVKGGEC 180 VAVNCVLAVH RLLCNENGTA LADFLGLARS TGAAILLLGE R |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-37 | 2 | 184 | 38 | 218 | Protein SCARECROW |
5b3h_A | 2e-37 | 2 | 184 | 37 | 217 | Protein SCARECROW |
5b3h_D | 2e-37 | 2 | 184 | 37 | 217 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812393.1 | 1e-139 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 1e-115 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A3L6PBC2 | 1e-137 | A0A3L6PBC2_PANMI; Scarecrow-like protein 28 | ||||
TrEMBL | A0A3L6RY24 | 1e-137 | A0A3L6RY24_PANMI; Scarecrow-like protein 28 | ||||
STRING | Si008220m | 1e-138 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Publications ? help Back to Top | |||
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