PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc11485.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 308aa MW: 31925.4 Da PI: 7.1662

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc11485.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++F ++ L H+r+H Zmw_sc11485.1.g00010.1.am.mk 5 TCKLCSRRFASPRALAGHMRSH 26 6********************9 PP
2	zf-C2H2	13.3	0.00024	259	281	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++Fs+ L H r+H Zmw_sc11485.1.g00010.1.am.mk 259 HECPYCYRVFSSGQALGGHKRSH 281 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	0.0078	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.681	4	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.13E-7	5	26	No hit	No description
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.1E-4	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.13E-7	193	217	No hit	No description
SMART	SM00355	55	198	218	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.1E-9	198	222	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	5.7E-4	252	281	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.96E-5	255	282	No hit	No description
SMART	SM00355	0.2	259	281	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.39	259	281	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-12	259	281	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	261	281	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MAKNTCKLCS RRFASPRALA GHMRSHSLAA SAAAAAAAAA EAAAAKQQIS SASSASTSFT 60 TADDEDVGFK KPASIHALRE NPKRSLRAAD GSSFSSDRES EAESTQPPAK RASPPAAWGE 120 ADPVSSLSEA ATPEEDVALS LMKLSRDSWP SASRVEEADY AEDDDSDDDG YVAPPAPTPP 180 RRLAAPAPAP VAEKRTQFQC TACKKVFRSY QALGGHRASN VRGGRGGCCA PPVAPPPPPP 240 QPQTPSPLPE QQHGDEAPHE CPYCYRVFSS GQALGGHKRS HVCGAAAAAA AQQAAPPSPI 300 KNPGMIDL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797881.1	1e-98	zinc finger protein ZAT1-like
TrEMBL	A0A2T7FA04	3e-98	A0A2T7FA04_9POAL; Uncharacterized protein
STRING	Pavir.Ab02618.1.p	1e-98	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3518	33	77