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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc10424.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 99aa MW: 11065.5 Da PI: 10.1949 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.2e-09 | 64 | 97 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg 32 +g+WT+eEd lv+ ++++Gg+ +W+ ++ g Zmw_sc10424.1.g00010.1.am.mk 64 KGPWTEEEDRTLVEHIQKHGGHvsSWRNLPKAAG 97 79*******************9999998887666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.61E-9 | 54 | 94 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.3E-10 | 56 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.991 | 59 | 99 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.4E-7 | 64 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.70E-4 | 66 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 99 aa Download sequence Send to blast |
MQRSITSVLL RYKSRYEPRA TYTSNPSIPA ASPSPSREKR ACRKTSIESM GRSPCCCHDA 60 GVKKGPWTEE EDRTLVEHIQ KHGGHVSSWR NLPKAAGLN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105856.1 | 6e-29 | transcription factor MYB2 | ||||
Swissprot | Q8GWP0 | 6e-13 | MYB39_ARATH; Transcription factor MYB39 | ||||
TrEMBL | A0A1E5WJI7 | 4e-28 | A0A1E5WJI7_9POAL; Transcription factor MYB39 | ||||
TrEMBL | A0A3L6Q4P1 | 4e-28 | A0A3L6Q4P1_PANMI; Transcription factor MYB39 | ||||
TrEMBL | Q8S415 | 3e-28 | Q8S415_MAIZE; P-type R2R3 Myb protein | ||||
STRING | GRMZM2G081557_P01 | 2e-29 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |