PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09978.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 446aa    MW: 50299.6 Da    PI: 7.1269
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09978.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.47.4e-129794454373
                          GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                   lL++cAea+s++  ++ q+l+++ +   s +gdp+qRl ay++e+L ar  +s++++y+al++++ +   s e l+++k++
  Zmw_sc09978.1.g00010.1.am.mk  79 LLTKCAEALSEDRIAEFQKLVQEARGVISITGDPIQRLGAYLLEGLVARHGNSGTNIYRALKCRKPE---SNELLSYMKIL 156
                                   799***************************************************************9...99********* PP

                          GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetge 163
                                   ++++P+lkf++++aN aI ea+ +e+r+HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+
  Zmw_sc09978.1.g00010.1.am.mk 157 YNICPYLKFGYMAANGAIAEALRNEDRIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLDIVGK 237
                                   ******************************************************************999999********* PP

                          GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                                    L+++ ee+++p+ef++l     ++++ e+L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+l Pkv ++veq
  Zmw_sc09978.1.g00010.1.am.mk 238 MLKSMSEEFKIPLEFTPL-PVYATQVTNEMLEIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLAPKVTTLVEQ 317
                                   *****************6.77788999****************************************************** PP

                          GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                                   e+ +n+++Fl rf+e+++yysa+f+s++a+lpres+eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFk
  Zmw_sc09978.1.g00010.1.am.mk 318 ESHTNTTPFLMRFAETMDYYSAMFESIDANLPRESKERINVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFK 398
                                   ********************************************************************************* PP

                          GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   p+pls+++++ ++ ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  Zmw_sc09978.1.g00010.1.am.mk 399 PYPLSSYVNSVIRKLLACYS-DKYTLEEKDGAMLLGWKSRKLISASAW 445
                                   ****************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.06750427IPR005202Transcription factor GRAS
PfamPF035142.6E-12679445IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MAPDADDAAT GTKHEIEENK PAQLMRQRSR TCSHESRQPS PGVVWPHFAA GYPSASYEFR  60
PEKRQRELRE DPQNIVKLLL TKCAEALSED RIAEFQKLVQ EARGVISITG DPIQRLGAYL  120
LEGLVARHGN SGTNIYRALK CRKPESNELL SYMKILYNIC PYLKFGYMAA NGAIAEALRN  180
EDRIHIIDFQ IAQGTQWITL IQALAARPGG PPHVRITGID DPVSEYARGE GLDIVGKMLK  240
SMSEEFKIPL EFTPLPVYAT QVTNEMLEIR PGEALAVNFT LQLHHTPDES VDVNNPRDGL  300
LRMVKGLAPK VTTLVEQESH TNTTPFLMRF AETMDYYSAM FESIDANLPR ESKERINVEQ  360
HCLAKDIVNI IACEGKDRVE RHELLGKWKS RLTMAGFKPY PLSSYVNSVI RKLLACYSDK  420
YTLEEKDGAM LLGWKSRKLI SASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-74604453378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957943.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0A9Q2880.0A0A0A9Q288_ARUDO; Uncharacterized protein
TrEMBLA0A368Q6B20.0A0A368Q6B2_SETIT; Uncharacterized protein
STRINGSi029156m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]