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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc09758.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 188aa MW: 20971.4 Da PI: 8.6448 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.9e-05 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Zmw_sc09758.1.g00010.1.sm.mk 58 YSCSFCQREFRSAQALGGHMNVH 80 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.37E-6 | 55 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 0.001 | 56 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.261 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-5 | 58 | 81 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0049 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAEQISKYWG SARSSSSTSP IIPSWATSYS SEPSWEEQAF ARDAAAHLGG CVWPPRSYSC 60 SFCQREFRSA QALGGHMNVH RRDRALLRQG SSPDDGQEAS VEQPKQRPSF SRAVSNPSPT 120 APPPSYLTSI IKESRNNLFM TMRVEATDQC DDVELRRMKR RRLDPPLPIF LQTTVSLVAT 180 QGVDHDAK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 53 | 80 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 53 | 80 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 162 | KRRRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828169.1 | 6e-57 | uncharacterized protein LOC112903166 | ||||
TrEMBL | A0A0A9VPW5 | 2e-75 | A0A0A9VPW5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Ha00323.1.p | 2e-57 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 |