|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Zmw_sc08975.1.g00010.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
Family |
MYB |
Protein Properties |
Length: 535aa MW: 60888.2 Da PI: 9.5532 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zmw_sc08975.1.g00010.1 | genome | ZGD | - |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 44.1 | 4.6e-14 | 5 | 50 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l
Zmw_sc08975.1.g00010.1.am.mk 5 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 50
78*****************************.************986 PP
|
2 | Myb_DNA-binding | 33.8 | 7.7e-11 | 57 | 100 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l
Zmw_sc08975.1.g00010.1.am.mk 57 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 100
68*****************99.********8..**********9986 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent |
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent |
GO:0042742 | Biological Process | defense response to bacterium |
GO:0050832 | Biological Process | defense response to fungus |
GO:0009507 | Cellular Component | chloroplast |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 535 aa
Download sequence Send
to blast |
MIKGGVWKNT EDEILKAAVM KYGKNQWARI SSLLVRKSAK QCKARWYEWL DPSIKKTEWT 60 REEDEKLLHL AKLMPTQWRT IAPIVGRTPS QCLERYEKLL DAACAKDENY EPNDDPRKLR 120 PGEIDPNPES KPARPDPVDM DEDEKEMLSE ARARLANTRG KKAKRKAREK QLEEARRLAS 180 LQKRRELKAA GIDTRKRNRK RKGIDYNAEI PFEKRPPPGF YDTVGEDKPP EHVQFPTTIE 240 DLEGKRRVDI ESQLRKQDIA RNKILQRQDA PAAIMQANKL NDPEAVTKRS KLMLPPPQIS 300 DHELEEIAKM GSAGDPSLVE ELGEGSTATR ALLSSYSQTP RLGMTPLRTP QRTPAGKVDA 360 IMMEAENLAR LRESQTPLLG GDNPDLHPSD FSGVTPRKKE IQTPNPMATP LASPGATPRI 420 GMTPSRDGNS FGLTPKATPF RDELRINEEV DMQDSAKLEL RRQAELRKSL RSGFASIPQP 480 KNEYQIVMPP ITEDEKEEAE EKIEEDMSDR LARERAEEQA RQEALLRKRS KVLQR
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5mqf_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 1 | 535 | 5 | 543 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 182 | 201 | KRRELKAAGIDTRKRNRKRK |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |