PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc08683.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 340aa MW: 37722.5 Da PI: 9.4805 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.7 | 3.5e-12 | 98 | 176 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++p +fa++ gg+ + + l ++ g++W+ l++ +++g+ l +GW eFv a+g+ +g +vvF+l+ + +v+ Zmw_sc08683.1.g00010.1.am.mk 98 RVPAEFAARLGGD--G-GLVLLVSPFGKVWRTALRHegGGNRGAWQLVEGWPEFVAAHGVAAGWSVVFRLECAGVA--TVR 173 6899***999988..3.3799*************995544444588999********************9764444..676 PP EE- CS B3 96 vfr 98 +f+ Zmw_sc08683.1.g00010.1.am.mk 174 AFD 176 665 PP | |||||||
2 | B3 | 38.6 | 1.9e-12 | 208 | 284 | 10 | 90 |
HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + +p kf++eh + ++++s+ ++ ++ g+ W+v l ++ + +++ ++GW++F + ++L e+ ++vF+++g++ Zmw_sc08683.1.g00010.1.am.mk 208 LE---KMKMPDKFVQEHltE-SSPSSQNAIIFSRLGKFWRVDL--ERAQMGVLRGEGWSRFLRVHDLSERNILVFRYEGNM 282 33...3679*********54.55678899999***********..9**999**************************9987 PP EE CS B3 89 ef 90 f Zmw_sc08683.1.g00010.1.am.mk 283 VF 284 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.9E-7 | 81 | 178 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-12 | 82 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.06E-12 | 84 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.6E-10 | 98 | 176 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 9.939 | 114 | 178 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.49E-6 | 121 | 176 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-15 | 195 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-14 | 195 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.574 | 196 | 292 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.37E-10 | 197 | 284 | No hit | No description |
SMART | SM01019 | 7.5E-7 | 199 | 287 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-10 | 209 | 283 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
VQQQSHAQFV PVVGWVGRRR SQLILALQSK GQCAAAGVKL SSPELQASLL GSHSCPCYLS 60 ARQPRSQSMA LSMHRARLKY AAALLSPSCR HKLPSVQRVP AEFAARLGGD GGLVLLVSPF 120 GKVWRTALRH EGGGNRGAWQ LVEGWPEFVA AHGVAAGWSV VFRLECAGVA TVRAFDGADC 180 LARFCTPLEG TMVKDRPRFF RLLRPEDLEK MKMPDKFVQE HLTESSPSSQ NAIIFSRLGK 240 FWRVDLERAQ MGVLRGEGWS RFLRVHDLSE RNILVFRYEG NMVFSAEAFL QDGRLKEYEA 300 AAGTHITDDI IGPSKPQGSQ PVLDSIFKLI YCYFYADVIC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305580.1 | 7e-96 | putative B3 domain-containing protein Os06g0632500 | ||||
Swissprot | Q67VL7 | 2e-80 | Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500 | ||||
TrEMBL | A0A194YKE1 | 9e-94 | A0A194YKE1_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A2T7DWC3 | 7e-94 | A0A2T7DWC3_9POAL; Uncharacterized protein | ||||
STRING | OGLUM06G22930.1 | 4e-82 | (Oryza glumipatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP425 | 35 | 187 |