PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc08548.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 241aa MW: 27079.9 Da PI: 5.8582 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 56.8 | 4.3e-18 | 76 | 143 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS....STT....EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae....dpk....vveitYegeHnhe 59 Dg +WrKYGqK++++ ++prsYYrCt++ gC+++k v++++e dp+ + +++Y+g+H+++ Zmw_sc08548.1.g00020.1.am.mk 76 DGRQWRKYGQKKINKEKHPRSYYRCTYRqeqGCKATKTVQQQDEsagtDPTtaavMYTVVYHGQHTCK 143 999************************98899*******99875222255423335678999***997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.3E-22 | 71 | 144 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.89E-20 | 71 | 144 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-26 | 74 | 144 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-23 | 76 | 143 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.239 | 76 | 116 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MFQDVLDCSS KAMAELQLLH DKSDDDALLV DDKKRVRRIN PNEVDKEDVI KPHQKHNSRR 60 RFADSVPLET PVPHYDGRQW RKYGQKKINK EKHPRSYYRC TYRQEQGCKA TKTVQQQDES 120 AGTDPTTAAV MYTVVYHGQH TCKQGTNGSD SGADGGFETK TTTVLQSSSD DSRSSVSKNC 180 LEHPCSDQLQ SSLDGRNEPI NGSAEFIAEN SMYEAFDMTA ASAFLELDSC WDLDALLRSC 240 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-13 | 76 | 143 | 10 | 69 | OsWRKY45 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977389.1 | 8e-77 | probable WRKY transcription factor 63 | ||||
TrEMBL | K3Y972 | 2e-75 | K3Y972_SETIT; Uncharacterized protein | ||||
STRING | Si010764m | 3e-76 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3258 | 30 | 79 |