PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08332.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 325aa MW: 35664.1 Da PI: 8.4305

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08332.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00026	227	249	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F ++ L H++ H Zmw_sc08332.1.g00010.1.am.mk 227 FSCTYCDKKFYSSQVLGGHQNAH 249 89**************9999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.92E-6	215	263	No hit	No description
PROSITE profile	PS50157	11.136	227	254	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	229	249	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
LNANARACAS NAPGSDQASL VWARHGGQGG MQFGRQEAIT MRGRGCTTWW LRPSLGLCRP 60 SLSTSNSASH ALRPSISGTR MPPPPPPPLG VFDCIDLMRT GTRFTFFVHY RFWHCLLCEQ 120 RGLVDDRPLF WAPFTAQRAP PQDSDTNFHG PFIDGRLLAR FAHSTERLFS CANIAFHLRR 180 PPAGCVLMDP NGGRGFGSEA DFDLDLDLNL SLQQPSLAPE PEPPGYFSCT YCDKKFYSSQ 240 VLGGHQNAHK FERSVAKRAR ELAAARRHAA GQGGERGTAS EDEARRGKEL GIGLPDSQAS 300 SSQQIRSSPE SRRDLADDID LSLKL

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274