PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc08250.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 267aa MW: 28909.1 Da PI: 9.472

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08250.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.2	6.5e-30	45	119	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 g+kdrhsk+ T +g+RdRRvRlsa++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ + Zmw_sc08250.1.g00020.1.sm.mk 45 GGKDRHSKVKTVKGLRDRRVRLSAPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDLVvghL 119 78*************************************************************999983334331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	29.928	46	104	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.3E-27	46	107	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MISSNNRQAA DEELARNQHA AVASSRQQWS AQTESRIVRV SRVFGGKDRH SKVKTVKGLR 60 DRRVRLSAPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP PQDLVVGHLP 120 LVHEEKFGHH VGAAAALANE RAKAGHADPD VESGAHHHLG RFPGGYHRFM GLNSSLGMVN 180 SAMAAFNNYS GEAWNNNNVH DSGAGSPHVA VAAAQHSSFP SLLSLAPGPH QQVFYSSEAD 240 QQFQVGNLGS QGLSLSSARA FHDHTGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-20	51	105	1	55	Putative transcription factor PCF6
5zkt_B	7e-20	51	105	1	55	Putative transcription factor PCF6
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970055.1	1e-124	transcription factor PCF5
TrEMBL	A0A3L6SMS6	1e-130	A0A3L6SMS6_PANMI; Transcription factor PCF5-like
STRING	Pavir.J15913.1.p	1e-125	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84