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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc08102.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | YABBY | ||||||||
Protein Properties | Length: 154aa MW: 16863.1 Da PI: 8.8445 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 42.7 | 2e-13 | 5 | 38 | 3 | 36 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvt 36 ++ e+vCyv+CnfC+t+lavsvP +s+++vvt Zmw_sc08102.1.g00010.1.sm.mkhc 5 TVAPVEHVCYVHCNFCSTVLAVSVPGNSVLTVVT 38 566789***************************9 PP | |||||||
2 | YABBY | 33.1 | 1.9e-10 | 66 | 106 | 94 | 134 |
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134 ++ + ++ + +++ ++++ + r PekrqrvPsaynrfi Zmw_sc08102.1.g00010.1.sm.mkhc 66 AKFRLPTMYSAQNDLLQEQALAARAPEKRQRVPSAYNRFIN 106 33444444444444455555689****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.5E-10 | 9 | 38 | IPR006780 | YABBY protein |
Pfam | PF04690 | 9.9E-9 | 64 | 105 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MSAQTVAPVE HVCYVHCNFC STVLAVSVPG NSVLTVVTEN IRPQGIINGT SRDQFDHLEF 60 GSSSSAKFRL PTMYSAQNDL LQEQALAARA PEKRQRVPSA YNRFINIASR LWAHYPNIHF 120 GLSSPGREGG KKLVDETVAA VTTPAPTNKI QGFY |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804908.1 | 4e-57 | protein YABBY 6-like isoform X2 | ||||
Swissprot | Q2QM17 | 6e-45 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0A8Y151 | 2e-60 | A0A0A8Y151_ARUDO; Uncharacterized protein | ||||
STRING | Sb08g022030.1 | 3e-56 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |