PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08102.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family YABBY
Protein Properties Length: 154aa    MW: 16863.1 Da    PI: 8.8445
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08102.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY42.72e-13538336
                           YABBY  3 vfssseqvCyvqCnfCntilavsvPstslfkvvt 36
                                    ++   e+vCyv+CnfC+t+lavsvP +s+++vvt
  Zmw_sc08102.1.g00010.1.sm.mkhc  5 TVAPVEHVCYVHCNFCSTVLAVSVPGNSVLTVVT 38
                                    566789***************************9 PP

2YABBY33.11.9e-106610694134
                           YABBY  94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfik 134
                                     ++ +  ++ + +++ ++++  + r PekrqrvPsaynrfi 
  Zmw_sc08102.1.g00010.1.sm.mkhc  66 AKFRLPTMYSAQNDLLQEQALAARAPEKRQRVPSAYNRFIN 106
                                     33444444444444455555689****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.5E-10938IPR006780YABBY protein
PfamPF046909.9E-964105IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MSAQTVAPVE HVCYVHCNFC STVLAVSVPG NSVLTVVTEN IRPQGIINGT SRDQFDHLEF  60
GSSSSAKFRL PTMYSAQNDL LQEQALAARA PEKRQRVPSA YNRFINIASR LWAHYPNIHF  120
GLSSPGREGG KKLVDETVAA VTTPAPTNKI QGFY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804908.14e-57protein YABBY 6-like isoform X2
SwissprotQ2QM176e-45YAB6_ORYSJ; Protein YABBY 6
TrEMBLA0A0A8Y1512e-60A0A0A8Y151_ARUDO; Uncharacterized protein
STRINGSb08g022030.13e-56(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121