PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc07906.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 301aa MW: 32887 Da PI: 6.8148 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 97.3 | 1.5e-30 | 1 | 97 | 5 | 97 |
DUF573 5 rlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfske 83 rlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++ksqlveK+rrLK+K++++v++ + g ++sf+++ Zmw_sc07906.1.g00030.1.sm.mk 1 RLWTDEDEIVILRAFAEFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKRKYRNCVDRlRVAGPNFSFRSP 83 89**********************9977778***************************************88899******** PP DUF573 84 hdqkifelskkiWg 97 h+q ife+++ iW+ Zmw_sc07906.1.g00030.1.sm.mk 84 HEQAIFEIARTIWR 97 *************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.0E-28 | 1 | 96 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 301 aa Download sequence Send to blast |
RLWTDEDEIV ILRAFAEFTA QRGTAFASHQ YDTTPFYEDM RGRLQTGFTK SQLVEKLRRL 60 KRKYRNCVDR LRVAGPNFSF RSPHEQAIFE IARTIWRPAS DKHGRDSDDE GNDDGLAIDA 120 AAAARVNGES AKSPTSRPRR GRRRRAGDFP AGDAAEALPQ APMPAMTTED ALPSFPQPTA 180 MDGTGTVTME QPAAAGLPAM LSAAATVATT TGTAENPILA SLFKEMFRSM LNISSSSATP 240 GLEPPPAIPG LPMDGEKWRQ QRILELEVYL RRIALLQDQA QAALEELRSA PPQYGAGGTN 300 T |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794014.1 | 1e-130 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A2T7CC96 | 1e-128 | A0A2T7CC96_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8I4R3 | 1e-128 | A0A2T8I4R3_9POAL; Uncharacterized protein | ||||
STRING | Sb01g034370.1 | 1e-126 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |