PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07647.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 295aa    MW: 32523 Da    PI: 9.7836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07647.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.11.6e-30239289151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   krien++ rqvtf+kRrng+lKKA+ELSvLCd+eva+i+fss+g+lyeys+
  Zmw_sc07647.1.g00020.1.am.mk 239 KRIENTTSRQVTFCKRRNGLLKKAYELSVLCDVEVALIVFSSRGRLYEYSN 289
                                   79***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.927231291IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-28231291IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-40231290IPR002100Transcription factor, MADS-box
CDDcd002654.01E-39232295No hitNo description
PROSITE patternPS003500233287IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-31233253IPR002100Transcription factor, MADS-box
PfamPF003192.0E-26240287IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-31253268IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-31268289IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MDRGSALGIR ASAVVGDDDG FPFPGGFLGA DRSIAAVRFD REEHLVAGVQ GRGGSSTETG  60
RWSWGGVWGR IRCCSPELGN STLTDRHTAL IAFCRWWCRG GGDHSTSPSP SPWTFVKKTC  120
CELLVLPLSN MWPGCQSPIP GFVLASLLSK KRGQRRGTSG FWKASAFPSE ISYCLDRSLS  180
DLVHGGGKGR RYILSDTVDL PCLSGRDREG KAERVTDLSS RSQLFRVSCR MGRGRIEIKR  240
IENTTSRQVT FCKRRNGLLK KAYELSVLCD VEVALIVFSS RGRLYEYSNN RSVDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-19231289159Myocyte-specific enhancer factor 2B
1tqe_Q8e-19231289159Myocyte-specific enhancer factor 2B
1tqe_R8e-19231289159Myocyte-specific enhancer factor 2B
1tqe_S8e-19231289159Myocyte-specific enhancer factor 2B
6c9l_A8e-19231289159Myocyte-specific enhancer factor 2B
6c9l_B8e-19231289159Myocyte-specific enhancer factor 2B
6c9l_C8e-19231289159Myocyte-specific enhancer factor 2B
6c9l_D8e-19231289159Myocyte-specific enhancer factor 2B
6c9l_E8e-19231289159Myocyte-specific enhancer factor 2B
6c9l_F8e-19231289159Myocyte-specific enhancer factor 2B
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398