![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc07610.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 103aa MW: 11362.8 Da PI: 9.6816 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3.1e-13 | 70 | 103 | 3 | 40 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae 40 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Zmw_sc07610.1.g00040.1.am.mk 70 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAE 103 9*******.**********843...4**********76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-18 | 69 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-7 | 69 | 103 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-12 | 69 | 103 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.411 | 69 | 103 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.22E-16 | 70 | 103 | No hit | No description |
PRINTS | PR00367 | 1.7E-9 | 70 | 81 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-8 | 70 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-9 | 92 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 103 aa Download sequence Send to blast |
MCGGAIISEY IPHRPTGGGS SKRSLCATDF WPDAAADFDV DPVNPERATG AAYPVADQEP 60 ARKRERKTMY RGIRRRPWGK WAAEIRDPAK GARVWLGTFA TAE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-13 | 70 | 103 | 6 | 40 | ATERF1 |
3gcc_A | 3e-13 | 70 | 103 | 6 | 40 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 60 | 68 | ARKRERKTM |
2 | 62 | 76 | KRERKTMYRGIRRRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195439.1 | 1e-40 | ethylene-responsive transcription factor ERF071-like isoform X2 | ||||
Swissprot | P42736 | 1e-25 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A1E5VCJ3 | 2e-39 | A0A1E5VCJ3_9POAL; Uncharacterized protein | ||||
STRING | Si031079m | 1e-39 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |