PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07350.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 155aa MW: 16456.4 Da PI: 8.7301

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07350.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	44	66	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Zmw_sc07350.1.g00020.1.sm.mk 44 FSCTYCQRKFYSSQALGGHQNAH 66 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.0E-4	39	69	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.35E-6	41	71	No hit	No description
PROSITE profile	PS50157	11.053	44	71	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	46	66	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MEKQPADDVN LDLRLIHSTE LVRGTVRHRH LARGAVAAEP DRTFSCTYCQ RKFYSSQALG 60 GHQNAHKLER SLAKRSRELS AVAIGAAISS ASAAPASPSS ELGNWFPAAA HAGDQAAAAA 120 VVNWIADGGR RYAYRVHAAA PVAGDADDID LSLKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822138.1	2e-46	zinc finger protein 36-like
TrEMBL	A0A3L6RM72	2e-48	A0A3L6RM72_PANMI; Zinc finger protein 1-like
STRING	Pavir.Fb02284.1.p	2e-50	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274