PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07315.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 77aa MW: 8646.18 Da PI: 10.811 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83 | 1.8e-26 | 10 | 59 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50 rien++ rqvtfskRr g++KKA+EL +LCdaev +++fss tg+lye+ Zmw_sc07315.1.g00020.1.am.mk 10 RIENTTSRQVTFSKRRSGLFKKAKELAILCDAEVGLVVFSStTGRLYEFT 59 9***********************************9998637******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 28.118 | 1 | 62 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.4E-35 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.91E-34 | 2 | 63 | No hit | No description |
SuperFamily | SSF55455 | 1.02E-26 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-22 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-26 | 10 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-22 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.7E-22 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MGRGKIVIQR IENTTSRQVT FSKRRSGLFK KAKELAILCD AEVGLVVFSS TTGRLYEFTN 60 TRFVLLVSSC FLAKLDV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-16 | 1 | 61 | 1 | 60 | MEF2C |
5f28_B | 5e-16 | 1 | 61 | 1 | 60 | MEF2C |
5f28_C | 5e-16 | 1 | 61 | 1 | 60 | MEF2C |
5f28_D | 5e-16 | 1 | 61 | 1 | 60 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820847.1 | 9e-32 | MADS-box transcription factor 23-like isoform X3 | ||||
Swissprot | Q6EP49 | 2e-28 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A2T7D7K2 | 5e-31 | A0A2T7D7K2_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G044408_P01 | 2e-30 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Publications ? help Back to Top | |||
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