PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07143.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 813aa    MW: 86170.1 Da    PI: 8.6851
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07143.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002231251323
                                   ETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                   C+ C+k F r  nL+ H r H
  Zmw_sc07143.1.g00030.1.am.mk 231 CEVCNKGFQREQNLQLHRRGH 251
                                   *******************88 PP
2zf-C2H211.20.0012306328123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC +C+k++  +s+ k H + +
  Zmw_sc07143.1.g00030.1.am.mk 306 WKCDKCSKRYAVQSDWKAHSKIC 328
                                   58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.56E-8228251No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5228251IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.025229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.97229251IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SMARTSM0035589271301IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4294327IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.56E-8301326No hitNo description
SMARTSM00355140306326IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MMHGHDKREL TYAFSDLGPA GSSVHFTTAL CLREPAPIRY GAHFSLLRPA LSCILLSSTA  60
LLSLGRGREE EQHTAAATRE RFPGFGFCRP RSSLISHRSE NLSPMVAAPR VLPEEVMASN  120
SSAAFFGIRD GDQQDQIKPL ISPQQQLGAA LPGLPDAATA APGHGAPAAA PPPPKKKRTL  180
PGKSLFLFDS GRACRLETCL CRDLVWNDWN PDAEVIALSP KTLLATNRFL CEVCNKGFQR  240
EQNLQLHRRG HNLPWKLKQK NPLQAQRRRV YVCPEPTCVH HDPARALGDL TGIKKHFSRK  300
HGEKKWKCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRIRVLFGL AATWLWMPCD  360
ERGAAPRPPG QRKMASCGNC SHEPGGRARS TPFHGYVTMP LDFPYPPWVM VPWEVSLPAP  420
PKFSDLLGVR DSFITHRAFC DALAQESARL PPTSLSSLTG HLYGAANAGN MALSLSQVGS  480
HLNSTFQDGQ HHHPPPELLR LGGMAGGSSI AARLDHLLSP SGASAFRPQQ APPSSAFFLN  540
AAAGQDFGDG AGNGPHSFLQ SKQFHGLMQL PDLQGNGAGG PGASGPGLFN IGFFTGNANS  600
SGSSHEHASQ GLMSNDQFSG GAGGGGGGGG SEAGIFGGNY VGGGDQVPQA GLFNDQAASM  660
LPQMSATALL QKAAQMGATS SPNGAASMFR GFMGSSSHVR PATPHMEQSD ANLNDLMNSL  720
AGGGVNAGGM FGGSNGGGGA GMFDPRQLCN MDQEVKFGQG SGDVTRDFLG VGGGSIVRGI  780
STPRGDHQSS SDMSSLEAEM NKSTSSFNGG RMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-22302343344Zinc finger protein JACKDAW
5b3h_F7e-22302343344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1618630SGGAGGGGGGGGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001338648.11e-167uncharacterized protein LOC542199
RefseqXP_008668634.11e-167uncharacterized protein LOC542199 isoform X1
RefseqXP_008668635.11e-167uncharacterized protein LOC542199 isoform X1
TrEMBLA0A1D6E3190.0A0A1D6E319_MAIZE; Naked endosperm1
STRINGPavir.J10227.1.p1e-176(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798