PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07093.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 96aa MW: 10794.5 Da PI: 10.4202 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.7 | 6.2e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA+EL +LCdaev ++ fsstg+lyeyss Zmw_sc07093.1.g00010.1.sm.mkhc 10 RIDNTTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMTFSSTGRLYEYSS 59 8***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.006 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.13E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-32 | 2 | 86 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
MGRGKIVIRR IDNTTSRQVT FSKRRNGIFK KAKELAILCD AEVGLMTFSS TGRLYEYSST 60 SMKSLIDRYG KAKEEQQVAA NPNSELKVCS KQMEPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_B | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_C | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
5f28_D | 1e-20 | 1 | 83 | 1 | 83 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002452342.2 | 7e-56 | MADS-box transcription factor 27 isoform X4 | ||||
Refseq | XP_004952891.1 | 2e-55 | MADS-box transcription factor 27 | ||||
Swissprot | Q6EP49 | 4e-54 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A368PPS0 | 4e-54 | A0A368PPS0_SETIT; Uncharacterized protein | ||||
TrEMBL | K7U1A3 | 1e-55 | K7U1A3_MAIZE; MADS transcription factor (Fragment) | ||||
STRING | Sb04g024010.1 | 7e-58 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Publications ? help Back to Top | |||
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