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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07075.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 238aa MW: 25685.5 Da PI: 6.1725 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.1 | 2.1e-15 | 172 | 218 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq Zmw_sc07075.1.g00020.1.sm.mk 172 DHIMAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 218 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-17 | 172 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-19 | 172 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.6E-13 | 172 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.12E-17 | 173 | 222 | No hit | No description |
SMART | SM00353 | 5.5E-16 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEDSSNFMQW AMTTLHHEHH QQAVVVDGDR GEATFPSLHE LREASQVAEM VQELIAETHS 60 TNSWSSGDGE TTTDGSRVGN NNNLPPAAVD HDVWPASPNS AVRQRSCGVT NPPVSPVSWN 120 FSAAAAQPQP GGDGVLVETA AHGLPDLAYG SPPARSARLK SSGSMGSPYA QDHIMAERKR 180 REKINQRFIE LSTVIPGLKK MDKATILSDA TRYVKELQEK LKHLEAGGGR STETVAVL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 181 | ERKRRE |
2 | 177 | 182 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140919.1 | 1e-85 | uncharacterized protein LOC100272997 | ||||
Refseq | XP_020403288.1 | 1e-85 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
Refseq | XP_020403289.1 | 1e-85 | putative HLH DNA-binding domain superfamily protein isoform X1 | ||||
TrEMBL | A0A0A9D0A7 | 7e-95 | A0A0A9D0A7_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G120021_P01 | 4e-85 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |