PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06993.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 299aa MW: 33133.1 Da PI: 9.5516

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06993.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	228.6	2.8e-70	1	224	142	374
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles 222 +RiTgvg+ ++++++g+ L+ +A++lgv +ef++ v ++le+l++++L v+ +Ea+a+n++l+lh +++es + Zmw_sc06993.1.g00010.1.am.mk 1 VRITGVGA----PLDTMKAVGRELEAYAATLGVFLEFRA-VDRSLESLHIDDLGVRGDEAVAINSILELHCVVKESRGALN 76 7*****....99*********************.799**************************88877777 PP GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 +vL+++++lsPk +v+veq+a hn++ Fl rf+eal+yy+alfd+l+a lpr + r+ vE++ +g ei+nvv cega Zmw_sc06993.1.g00010.1.am.mk 77 ---SVLQTIRKLSPKAFVLVEQDAGHNGPFFLGRFMEALHYYAALFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGA 154 ...8************************************************************************* PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+erhe++ +Wr+r+++aGF++ p++ +a++a+ l+k++ + gy+v ee+g+lvlgWk++ ++++S+W+ Zmw_sc06993.1.g00010.1.am.mk 155 ARVERHERADQWRRRMSRAGFQSTPIR--MATKAREWLEKHAdGGGYTVAEEKGCLVLGWKGKHVIATSCWK 224 *********************96..67899***98899***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	9.8E-68	1	224	IPR005202	Transcription factor GRAS
PROSITE profile	PS50985	35.238	1	205	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
VRITGVGAPL DTMKAVGREL EAYAATLGVF LEFRAVDRSL ESLHIDDLGV RGDEAVAINS 60 ILELHCVVKE SRGALNSVLQ TIRKLSPKAF VLVEQDAGHN GPFFLGRFME ALHYYAALFD 120 ALDAALPRYD ARRARVEQFH FGAEIRNVVG CEGAARVERH ERADQWRRRM SRAGFQSTPI 180 RMATKAREWL EKHADGGGYT VAEEKGCLVL GWKGKHVIAT SCWKCIPSSA VYATHACHEH 240 VVTILHYTVV GGGVRFIKYR RTGLKTRHHC ISDSVCSAPR AGEAMRPRKV PGYLSSKPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-34	1	223	160	378	Protein SCARECROW
5b3h_A	7e-34	1	223	159	377	Protein SCARECROW
5b3h_D	7e-34	1	223	159	377	Protein SCARECROW
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814052.1	1e-145	DELLA protein RGL1-like
TrEMBL	A0A2S3HNZ9	1e-144	A0A2S3HNZ9_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DCV4	1e-144	A0A2T7DCV4_9POAL; Uncharacterized protein
STRING	Si000959m	1e-142	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5640	33	54