PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc06937.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

CO-like

Protein Properties

Length: 433aa MW: 47037.1 Da PI: 7.0607

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06937.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20.2	1.2e-06	23	55	3	35
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHk 35 +r C+ + + +++++C ++ +lC+ C + H+ Zmw_sc06937.1.g00030.1.am.mk 23 ARSCDGCMRRRARWHCPADDAYLCQACDAAVHS 55 578*************************99995 PP
2	CCT	64.2	3.8e-22	330	373	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F Kki Ye+RK +Ae+RpR+KGrFvk++ Zmw_sc06937.1.g00030.1.am.mk 330 REARVSRYREKRRTRLFAKKILYEVRKLNAEKRPRMKGRFVKRT 373 9*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.271	21	68	IPR000315	B-box-type zinc finger
SMART	SM00336	6.6E-7	21	68	IPR000315	B-box-type zinc finger
CDD	cd00021	2.91E-8	24	68	No hit	No description
PROSITE profile	PS51017	15.338	330	372	IPR010402	CCT domain
Pfam	PF06203	2.2E-17	330	372	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MTNAGTAAAA AVATGAALGA RTARSCDGCM RRRARWHCPA DDAYLCQACD AAVHSANPLA 60 RRHLRFRLPT ASSSSALQDP DAPTWLHGLK RGPRTPRSKP GSKHEAMCAT MAAVSSSAVP 120 DLEAEDSGSG IVGDNEHGLE DDDDDLLYRV PVFDPTLAEL YNPTADEGEE QKPACLISSL 180 VETSPDFASG SGQKNELSAF DVPDMELASF AADMESLLMG VEDGLDDLGF LDDEKPQVNV 240 DLGTDLEVAA APAPEREDKK RKRPQMILKL DYEGVIASWA RDGGSLWFHG ERQPHLDPGD 300 SWPDFSVSTT AVIVRGGIVG NVTAVTGGER EARVSRYREK RRTRLFAKKI LYEVRKLNAE 360 KRPRMKGRFV KRTALPQLPQ PSQQQKPQRA PPPAGMVLAP KMGVQCTGAS DFKTRGVRAC 420 KMHHCTCMRP KHD

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MTNAGTAAAA AVATGAALGA RTARSCDGCM RRRARWHCPA DDAYLCQACD AAVHSANPLA  60
RRHLRFRLPT ASSSSALQDP DAPTWLHGLK RGPRTPRSKP GSKHEAMCAT MAAVSSSAVP  120
DLEAEDSGSG IVGDNEHGLE DDDDDLLYRV PVFDPTLAEL YNPTADEGEE QKPACLISSL  180
VETSPDFASG SGQKNELSAF DVPDMELASF AADMESLLMG VEDGLDDLGF LDDEKPQVNV  240
DLGTDLEVAA APAPEREDKK RKRPQMILKL DYEGVIASWA RDGGSLWFHG ERQPHLDPGD  300
SWPDFSVSTT AVIVRGGIVG NVTAVTGGER EARVSRYREK RRTRLFAKKI LYEVRKLNAE  360
KRPRMKGRFV KRTALPQLPQ PSQQQKPQRA PPPAGMVLAP KMGVQCTGAS DFKTRGVRAC  420
KMHHCTCMRP KHD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982006.1	0.0	zinc finger protein CONSTANS-LIKE 16
TrEMBL	A0A1E5WFM1	0.0	A0A1E5WFM1_9POAL; Zinc finger protein CONSTANS-LIKE 7
STRING	Si035937m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10004	22	28