PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06684.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 379aa    MW: 39896 Da    PI: 6.5157
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06684.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.32.8e-11269325155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Zmw_sc06684.1.g00030.1.sm.mk 269 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 325
                                   57*******************4444.2455535555.7799999*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-15269335IPR016177DNA-binding domain
PfamPF008476.6E-9269325IPR001471AP2/ERF domain
CDDcd000181.97E-18269335No hitNo description
Gene3DG3DSA:3.30.730.106.8E-12270334IPR001471AP2/ERF domain
PROSITE profilePS5103217.082270333IPR001471AP2/ERF domain
SMARTSM003803.3E-22270339IPR001471AP2/ERF domain
PRINTSPR003673.9E-5271282IPR001471AP2/ERF domain
PRINTSPR003673.9E-5315335IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MATVNNWLAF SLSPQELPPS QTESTLMSAA ATDDVSGDVC FNIPQDWSMR GSELSALVAE  60
PKLEDFLGGI SFSDHNHKAN CNMIPSSTST CYASSGISAG YQLYHPPSSA LQFADSVMVA  120
SSAAGVHDGS GVLSAATANA GAAAAISNNG GSIGLSMIKN WLRSQPAPPH PRVDAADGAQ  180
AAQGLSLSMN MAGAQGAAMP LAGERGRAPE SVSTTSVQGG TMGSRKEDSS GGSGGAGALV  240
RVSTDTGGSG ASAEAVTRKT VDTFGQRTSI YRGVTRHRWT GRYEAHLWDN SCRREGQTRK  300
GRQGGYDKED KAARAYDLAA LKYWGPTTTT NFPVSNYEKE LEEMKHMTRQ EFVASLRRKS  360
SGFSRGITNM EDGKQESEE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818612.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ8LSN21e-70BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A1E5VW320.0A0A1E5VW32_9POAL; AP2-like ethylene-responsive transcription factor PLT2
STRINGSi000593m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110