PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06582.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 1996aa    MW: 209792 Da    PI: 10.2377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06582.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.0008216871709223
                                    EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2    2 kCpdCgksFsrksnLkrHirt.H 23  
                                    +C+ Cg++F  ++ L+ H  + H
  Zmw_sc06582.1.g00020.1.am.mk 1687 TCHRCGERFGKWEALEAHHLSkH 1709
                                    6*****************99877 PP
2zf-C2H211.70.0008217591781223
                                    EETTTTEEESSHHHHHHHHHH.T CS
                       zf-C2H2    2 kCpdCgksFsrksnLkrHirt.H 23  
                                    +C+ Cg++F  ++ L+ H  + H
  Zmw_sc06582.1.g00020.1.am.mk 1759 TCHRCGERFGKWEALEAHHLSkH 1781
                                    6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF019258.0E-1146192IPR002781Transmembrane protein TauE-like
PfamPF019253.6E-14402683IPR002781Transmembrane protein TauE-like
PfamPF019253.9E-9811927IPR002781Transmembrane protein TauE-like
SuperFamilySSF495039.75E-2911291227IPR008972Cupredoxin
Gene3DG3DSA:2.60.40.4207.0E-3211291231IPR008972Cupredoxin
PROSITE profilePS5148537.56211301229IPR003245Phytocyanin domain
CDDcd042165.15E-3911301227No hitNo description
PfamPF022986.3E-2211451221IPR003245Phytocyanin domain
ProDomPD0031225.0E-1911641229IPR003245Phytocyanin domain
SMARTSM003553.616861709IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028016881709IPR007087Zinc finger, C2H2
SMARTSM003553.617581781IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028017601781IPR007087Zinc finger, C2H2
SuperFamilySSF563996.19E-1917831995No hitNo description
Gene3DG3DSA:3.90.228.102.1E-818071969IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0009055Molecular Functionelectron carrier activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1996 aa     Download sequence    Send to blast
MTRTAPLAPL LVAAIVSVLF PAAAAFNTTT TTSTSPRPGH LPNLLAEVSR WRERRYMAGD  60
HQSSHSGGGG AAFGTRANHV AAWVLSFLAS AVSSAGGVGG GSLFLPILNL VAGLSLKRAT  120
AYSSFMVTGG AASNVLYNLA RTGGGGRLID YDIALLFQPG LLLGVSIGVV CNVMFPEWLI  180
TALFALFLAC CTFKTCRAGV KIWRAEGGGG RGGDSNDMEP LLMPRDGSLV DGNDGGGGGD  240
AGFPWKDVAL LVMVWLCFFA LHVFIGDKHG KVRTALLGDA TCSLARKPLP TCRVLATEER  300
IAGYMRPSEK AECLSQSRRL FRCHVIVCDM LLWSPTRHGG KIKPCGVAYW LLTFSQLPFA  360
VAFTWYIIHA KSKKRAVHNQ EEGKENLVGA GMGALPSFTF PLAAFVTGAL SGLFGIGGGL  420
LLNPVLLQIG IPPQTAAATS TFMVLFCASM SMVQFILLGM KGIGEASVYG AICFVASVAR  480
SLVIQRAINK SGRVSLLVFL VTGIMALSTV IVTCVGAIDV WSTEKMNSSL LLTSSARVVN  540
STSMAYLSQW RSQRLMESSF QSIDGNVVSA GVLSILAAAL ASAAGVGGGS LFVAILSIVS  600
RLSVKTATAF ARFMVTGGSL SNVLYTVFLR GPGPGGEPLI DYDIVVASQP CLLLGVSVGV  660
LCNVVFPEWL VTALFTVFLA FTTFKTYRTG VRRWRAETVA MGRTQDGDGD VDGTKGPLLG  720
RGTGVVVRQC RWVDMAVLVM VWLCFFLVHL LVGGKGAVNI KPCGVAYWLI TVAQMPIAVA  780
FTACIVHQKR KSSRTQNGLV IVDEAVSVKS RLNALPAYVF PVAALLTGVM SGLFGIGGGL  840
LLNPVFCHIG VPPKTSSATA MFMVLFSSSM STVQFVILGV DGIANALVYA AVCFVASAVG  900
LAVIEGAIRR SGRVSLIVFA VATVMALSAA RSRAPAPRVS GRSMNPCAAR ASDGHGRPLG  960
VRSSAFTKSG PNFAVTPAGT LWRARFGPTA WLLLVRVSAA DRTPQPPAPV RTCADRTSPR  1020
PGDVPSPYAS WTVYSAASGA GQIPPWRAGA TARRDGEKAP CRASGRCTRD RSARFSLLET  1080
RPSCAFAVVD AVQAGAGSLA SGRILVKMAA MKALTGAAMA LSLIHAVTAT DYVVGSPDGG  1140
WDGRTNYKSW SEAQTFAPGD TLTFKYNSYH NVLEVTKHSF DECITSNPIS YDTSGSTTVL  1200
LTMPRKRYFI CGAPEHCLNG MKMAIEVADR PAPTTPTSPP PLPPPPPPPE YAARQPAPAP  1260
PMMSSTPAPT PSAPAAPAPV AAAPPSRAGH KKKHRKKGYC SPGTAPARAP TVQSVVEADF  1320
PEAAFAPMSS PTPPQATSGS PAVLRGKVTV ALAAVAGFML VALLQNSGQR KPRTRAKLPH  1380
QCWTPDRSIT SRSVRAHRLP LPPFLNLWSS PRTTPGQHGE LLARATRAEA SQQLVCDRPI  1440
PSARVEMGER RRRPSAAVAG DVRAEEEEKA AAPGNGAPPT VWFALKKSLR CRSAPSEVHA  1500
PRPKAAAAPS AGHLASIVTK RAAPRSGCSR SIANLRDVIH GSKRHPGQPP SCSSPRSIGS  1560
SELLNPIAHE VVLSTNARCE LKITGFGGLG AAGAAHDSDG DAVSSFVGTL RPGTPGPAWA  1620
AAAAGYGLQR SGSCRGSSSI RCTPPRSPNL LMERNGSSVI SAHRASCEET ASKSGGGNSK  1680
GSGGGPTCHR CGERFGKWEA LEAHHLSKHA GLTYIASLFL HGXXXRNGSS VISAHRASCE  1740
ETASKSGGGN SKGSGGGPTC HRCGERFGKW EALEAHHLSK HAVTELMEGD SSRKIVEIIC  1800
RTSLLKSESS CVRIERVFKV HNTQRTLSRF EEHREAVKLK ASKLAKKHPR CLADGNELLR  1860
FHGATIACAL GGAGGSSSSL CASDKCAVCR IIRHGFVSSK KEAGAVGVFT TSTSGRAFES  1920
IDAPADDDLA TTRKALLVCR VIAGRVHRPL DNLREIAGQT GFDSLAGKVG PYSNIEELYL  1980
LNPRALLPCF VVVCKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ws7_A2e-141146122720102Mavicyanin
1ws7_B2e-141146122720102Mavicyanin
1ws7_C2e-141146122720102Mavicyanin
1ws7_D2e-141146122720102Mavicyanin
1ws8_A2e-141146122720102mavicyanin
1ws8_B2e-141146122720102mavicyanin
1ws8_C2e-141146122720102mavicyanin
1ws8_D2e-141146122720102mavicyanin