PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc06576.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 601aa MW: 65083.8 Da PI: 7.5105

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06576.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	66.8	3.3e-21	494	544	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++ d+s+yF+lp+++A+keL+vc+TvLK i R++GI RWP+Rki+++ Zmw_sc06576.1.g00010.1.am.mk 494 TSKLERRDISRYFHLPMAEACKELQVCATVLKCIRRKFGITRWPYRKINKI 544 678999******************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.90.280.10	1.5E-43	3	158	IPR008914	Phosphatidylethanolamine-binding protein
SuperFamily	SSF49777	5.36E-38	5	158	IPR008914	Phosphatidylethanolamine-binding protein
CDD	cd00866	1.31E-34	25	151	No hit	No description
Pfam	PF01161	7.2E-8	49	149	IPR008914	Phosphatidylethanolamine-binding protein
PROSITE pattern	PS01220	0	67	89	IPR001858	Phosphatidylethanolamine-binding, conserved site
PROSITE profile	PS51519	15.88	479	564	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-19	497	544	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence Send to blast
MSVSRDPLVV GRIVGDVVDP FAASALLRVV YGGREMTCGS ELRPSQVVNE PMVQVTGGGG 60 GCGGALYTLV MVDPDAPSPS NPSNREYLHW YVVAYEGPRP SAGIHRFAFI VFRQAVRQVI 120 YAPGWRANFN TRDFTACYSL GAPVAAVYFN CQREGGCGGR SPTQQLLSLQ TALSALRTSR 180 PPPATPAISR PLHPSRPCAS PHTLAAQRAA MAANGDPLLV PDVDVMHLLD VPGGLYSPPA 240 ATPTQNVTSN GCYSGNPFDW TAMASHGAYS SAESDAPPAV GATMAGGASS TSDRQDVRAP 300 SSYVHKGVLD CTGCQLLREI LHCNGFETTK LCIHGAAGLF FHATLEVYRH ASHEGSAMAP 360 THRSFTDFIA RDYAWVKHYL LDYAQQRAAG GYTVVYDSTS DFLDVLCTSM VGIGGQADDR 420 HEIAASAEAK IIVDDDDQLL ANAGAAVHPM VVEEEDEPAA SGPSQPRNNA VDKQKQQVVQ 480 PGMRSRLAIQ RERTSKLERR DISRYFHLPM AEACKELQVC ATVLKCIRRK FGITRWPYRK 540 INKIDNQIAK LRENGNGSAA AMEEIQKLID AKREIIDVRP AAMDEQTLLW TSKGNKKFLP 600 L

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence Send to blast

MSVSRDPLVV GRIVGDVVDP FAASALLRVV YGGREMTCGS ELRPSQVVNE PMVQVTGGGG  60
GCGGALYTLV MVDPDAPSPS NPSNREYLHW YVVAYEGPRP SAGIHRFAFI VFRQAVRQVI  120
YAPGWRANFN TRDFTACYSL GAPVAAVYFN CQREGGCGGR SPTQQLLSLQ TALSALRTSR  180
PPPATPAISR PLHPSRPCAS PHTLAAQRAA MAANGDPLLV PDVDVMHLLD VPGGLYSPPA  240
ATPTQNVTSN GCYSGNPFDW TAMASHGAYS SAESDAPPAV GATMAGGASS TSDRQDVRAP  300
SSYVHKGVLD CTGCQLLREI LHCNGFETTK LCIHGAAGLF FHATLEVYRH ASHEGSAMAP  360
THRSFTDFIA RDYAWVKHYL LDYAQQRAAG GYTVVYDSTS DFLDVLCTSM VGIGGQADDR  420
HEIAASAEAK IIVDDDDQLL ANAGAAVHPM VVEEEDEPAA SGPSQPRNNA VDKQKQQVVQ  480
PGMRSRLAIQ RERTSKLERR DISRYFHLPM AEACKELQVC ATVLKCIRRK FGITRWPYRK  540
INKIDNQIAK LRENGNGSAA AMEEIQKLID AKREIIDVRP AAMDEQTLLW TSKGNKKFLP  600
L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wkp_A	2e-58	1	154	4	170	FLOWERING LOCUS T protein
1wkp_B	2e-58	1	154	4	170	FLOWERING LOCUS T protein
1wkp_C	2e-58	1	154	4	170	FLOWERING LOCUS T protein
1wkp_D	2e-58	1	154	4	170	FLOWERING LOCUS T protein

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A368QD38	1e-87	A0A368QD38_SETIT; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44