PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06510.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 269aa    MW: 28349.8 Da    PI: 7.2931
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06510.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002990112123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   +kC+ CgksF +   L  H  tH
  Zmw_sc06510.1.g00030.1.am.mk  90 FKCSVCGKSFGSYQALGGHKTTH 112
                                   89********9999998888887 PP
2zf-C2H212.50.00045164186123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++C+k F++   L  H r+H
  Zmw_sc06510.1.g00030.1.am.mk 164 HRCSICHKEFPTGQALGGHKRKH 186
                                   79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-490115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.7E-1390114IPR007087Zinc finger, C2H2
SMARTSM003550.008790112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.87E-990112No hitNo description
PROSITE profilePS5015712.98690117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-9159186No hitNo description
PfamPF139121.3E-12163188IPR007087Zinc finger, C2H2
PROSITE profilePS501579.058164186IPR007087Zinc finger, C2H2
SMARTSM003550.043164186IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTTAMELLHA ALPEQQRHEQ EEEVALTTSS SGDEGAHVPQ GWAKRKRSRR QRSEEENLAL  60
CLLMLSRGGN HRVQAPPPPA EPLTAAAAEF KCSVCGKSFG SYQALGGHKT THRAKQPARP  120
ATSGPVVEDA VPISAIPPTV AELREPATSS TAASSDGTTA SRVHRCSICH KEFPTGQALG  180
GHKRKHYDGG VGNSAAASAE LPAVAAAAAE TSEVGSSGNG SSAARAFDLN LPALPEFVWR  240
CAKAGTMWEE DEEVQSPLAF KKPRLLMTA
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.11e-110zinc finger protein 1
SwissprotQ424301e-103ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Y0SZ201e-122A0A0Y0SZ20_9POAL; C2H2-type zinc finger protein
STRINGSb01g007170.11e-109(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113