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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06495.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 781aa MW: 83881.1 Da PI: 5.9824 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 53.4 | 5.2e-17 | 282 | 351 | 2 | 70 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsets 70 v +L++cA+ +++ d+++a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++l++ pp+e + Zmw_sc06495.1.g00040.1.sm.mk 282 VGALTACADSLATCDQHAADYYLARLGEMASPAGpTPMHRVAAYFAEALAIRVVRMWPHLFDVTPPRELT 351 678***********************************************************99999876 PP | |||||||
2 | GRAS | 292.8 | 9.1e-90 | 355 | 629 | 18 | 297 |
GRAS 18 elaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshl 96 ++a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++l++ pp+e ++ ++ ++al++++ v+Pi++f h+ Zmw_sc06495.1.g00040.1.sm.mk 355 HAADYYLARLGEMASPAGpTPMHRVAAYFAEALAIRVVRMWPHLFDVTPPRELTDGAvDDDDAMALRILNAVTPIPRFLHF 435 6899************************************************998886788999***************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177 t N+ +l+a+eg++rvH+iDfdi+qGlQWp Llq+La+R+++p+++RiTgvg+ s++el+etg rL+++A++lg+ fe Zmw_sc06495.1.g00040.1.sm.mk 436 TLNERLLRAFEGHDRVHVIDFDIKQGLQWPGLLQSLAARASPPAHVRITGVGE----SRQELQETGARLEHVAASLGLAFE 512 *****************************************************....9*********************** PP GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258 f++ v++rled++l++L+vk+gE++aVn+vl +hrll+++ + ++L lv+s+ + ++ + e+e +ns+++ +rf+ Zmw_sc06495.1.g00040.1.sm.mk 513 FHA-VVDRLEDVRLWMLHVKRGECVAVNCVLTVHRLLRDESGAS--LADFLGLVRSTGAAILLLGEHEDALNSGRWEARFA 590 ***.7********************************6554444..589******************************** PP GRAS 259 ealeyysalfdsl.eaklpreseerikvErellgreivnv 297 +al+yy+a fd++ +a+l+ +s +r+k E++ ++rei+n+ Zmw_sc06495.1.g00040.1.sm.mk 591 RALRYYAAAFDAVdAAGLAYASPARTKAEEM-FAREIRNA 629 *************9999**************.*****995 PP | |||||||
3 | GRAS | 104.6 | 1.4e-32 | 630 | 751 | 255 | 374 |
GRAS 255 erflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 +rf++al+yy+a fd++ +a+l+ +s +r+k E++ ++rei+n+va eg++r+erh t++ Wr+r+e++GFk++ +++++a Zmw_sc06495.1.g00040.1.sm.mk 630 ARFARALRYYAAAFDAVdAAGLAYASPARTKAEEM-FAREIRNAVAFEGTDRFERHDTFAGWRRRMEDCGFKNAGIGDREA 709 79***************9999**************.********************************************* PP GRAS 335 kqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvSaWr 374 +q +l+ r+++ yrv+ + ++l+l W ++++++vSaW+ Zmw_sc06495.1.g00040.1.sm.mk 710 MQGRLISRMFAPGNYRVQAQgdGEALTLQWLNQAMYTVSAWT 751 ***********555***9654256677**************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 50.219 | 255 | 729 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.8E-14 | 282 | 351 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-87 | 355 | 629 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-30 | 630 | 751 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 781 aa Download sequence Send to blast |
MEVSACRSLG LAVVVAAVRA LRHSMLSLVQ EEEEEEEEGD EEEGNKFLLG TSHPAVSPIS 60 GMLAGCSFSS SRHQMSTTPR FDILQCGFSK RSNRGGDGAA APRVAAADPR AGGGNCSFRA 120 HPAPVTQAVS WGAKQEPSGN VAGGFWERSR AIKRAHEEDA VEEYGGPTVR AKRTRMGGDG 180 DEVWFHQSIA GTVQQAAPGE GEESEEEKVF LVPSAATFPH GMAAAGPSLA AAKQEFSNSP 240 SPASSGGTDG GGTSAVPPPP QVHARNGVPA HGEAGRETME LVGALTACAD SLATCDQHAA 300 DYYLARLGEM ASPAGPTPMH RVAAYFAEAL AIRVVRMWPH LFDVTPPREL TDGAHAADYY 360 LARLGEMASP AGPTPMHRVA AYFAEALAIR VVRMWPHLFD VTPPRELTDG AVDDDDAMAL 420 RILNAVTPIP RFLHFTLNER LLRAFEGHDR VHVIDFDIKQ GLQWPGLLQS LAARASPPAH 480 VRITGVGESR QELQETGARL EHVAASLGLA FEFHAVVDRL EDVRLWMLHV KRGECVAVNC 540 VLTVHRLLRD ESGASLADFL GLVRSTGAAI LLLGEHEDAL NSGRWEARFA RALRYYAAAF 600 DAVDAAGLAY ASPARTKAEE MFAREIRNAA RFARALRYYA AAFDAVDAAG LAYASPARTK 660 AEEMFAREIR NAVAFEGTDR FERHDTFAGW RRRMEDCGFK NAGIGDREAM QGRLISRMFA 720 PGNYRVQAQG DGEALTLQWL NQAMYTVSAW TPASDGDAGG STVSASLSVS VSTTASHSQQ 780 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-53 | 352 | 754 | 32 | 381 | Protein SCARECROW |
5b3h_D | 8e-53 | 352 | 754 | 32 | 381 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964401.1 | 0.0 | protein DWARF AND LOW-TILLERING | ||||
Swissprot | Q9LWU9 | 0.0 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | A0A1E5WNH3 | 0.0 | A0A1E5WNH3_9POAL; Scarecrow-like protein 28 | ||||
STRING | Si008220m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Publications ? help Back to Top | |||
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