PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc06481.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 542aa MW: 57852.3 Da PI: 8.6041 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 118 | 168 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++h ++Er+RR+++N+ ++ Lr+l+P + k+ + a+i +v+YIk+Lq Zmw_sc06481.1.g00040.1.am.mk 118 KMSHIAVERNRRKQMNEHLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 168 789*************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.32E-14 | 114 | 172 | No hit | No description |
SuperFamily | SSF47459 | 2.62E-17 | 116 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.555 | 116 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.1E-13 | 118 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-11 | 118 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.1E-12 | 122 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 542 aa Download sequence Send to blast |
MGDGGLCELL VDGRCDQLRH LSDAEDLFSI LETWEECTKG GLGGPRGSAA VFNSQVDCTG 60 GGSSVADAGA ARPTSTTMGN SRRRSVVDEA KGGSAPVQKK QKGTVAEPAP DDDDGAAKMS 120 HIAVERNRRK QMNEHLAVLR SLMPCFYVKR GDQASIIGGV VDYIKELQQV LRSLEAKKHR 180 KACADQVLSP RPGTAAASPR ALLDMSSMPQ ISRRVAVPIS PRTPTRPGSP YYVPGCGGRP 240 PHPAAAYMMA TSTQATTPTG SSSSCSSSHD QQQQHYSPYL PTLDSIVTEL AVHASAASRP 300 ILPDVKVEFA GPNLVLKTVS RRAPGQALKI IAALESLSLE ILHVSVSTVD DTMVHSFTIK 360 IGVECELSAE ELVQEIQRTI HGCMARANVL CAAQAATPIT ASPRCRQAPT PAALPNRRPL 420 SHRLRLWCPY PEELSRPLPR PPPPSPNSCP VAAKCSPLPR CLRLYCLHPE EDQPRRGHPP 480 PPQLRSPRLS RPYHGVDPPQ PQLAVATTDM CPVSVPLGSA AICPARPGPC LGRTALPLPL 540 PP |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799200.1 | 1e-150 | transcription factor SPEECHLESS-like | ||||
TrEMBL | A0A3L6QHE7 | 1e-152 | A0A3L6QHE7_PANMI; Transcription factor SPEECHLESS-like | ||||
STRING | Pavir.Aa02723.1.p | 1e-149 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3484 | 35 | 77 |