PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06453.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 325aa    MW: 34820.7 Da    PI: 9.7693
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06453.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1992152357
                                   --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+t+t+eql++L+el++    r p+ae+++++++ l    +++ ++V++WFqN++a+e++
  Zmw_sc06453.1.g00030.1.am.mk  92 SRWTPTPEQLRILKELYYTcgVRSPTAEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 152
                                   7*****************7669*************************************97 PP
2Wus_type_Homeobox114.16.8e-3791154365
             Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                    +RWtPtpeQ++iL+ely+ +G+r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Zmw_sc06453.1.g00030.1.am.mk  91 GSRWTPTPEQLRILKELYYtCGVRSPTAEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKK 154
                                   68***************9989*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1285156IPR009057Homeodomain-like
PROSITE profilePS5007110.20387153IPR001356Homeobox domain
SMARTSM003892.6E-789157IPR001356Homeobox domain
PfamPF000462.6E-1792152IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-792152IPR009057Homeodomain-like
CDDcd000862.03E-793154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MPLLQLIYFL HESRPCLSLV ILLVLKSSKK RKPPPSPRVL RLNPSSAFPS ITRISASAMQ  60
QPKQVTSAGD GVAAANASAR SGGVSVCRPT GSRWTPTPEQ LRILKELYYT CGVRSPTAEQ  120
IQRITAMLRQ HGKIEGKNVF YWFQNHKARE RQKKRLTNLD VNVPAADANH LGVVSLSPAA  180
RATSPSSTVG MYTGNGVGAS AMQLDAAVDW DNTAMVATEG CFLQDYMGVQ NTGGVHGSTG  240
AATSPWAWFS SPDQRTTTRA PETLPLFPTG DVDSCPRPWQ GVDASRGGSY YLPDLPCRCI  300
AINTCALPGC GVMVWSSSGG VSAAR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826282.13e-93WUSCHEL-related homeobox 1A-like
SwissprotQ7XM136e-63WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLA0A3L6Q0446e-93A0A3L6Q044_PANMI; Uncharacterized protein
STRINGSi024219m2e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]