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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06439.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 27163.3 Da PI: 7.8787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.6 | 3e-18 | 4 | 54 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++ GVr+++ +grWvAeI+d + ++ r +lg+f tae Aaka+++a++ l+g Zmw_sc06439.1.g00050.1.am.mk 4 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 54 79********.7*********32...35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.15E-16 | 4 | 62 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-19 | 4 | 63 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-12 | 4 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-27 | 5 | 62 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-33 | 5 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.915 | 5 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-7 | 6 | 17 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-7 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
NNHSKFVGVR QRPSGRWVAE IKDTTQKIRM WLGTFETAEA AAKAYDEAAR LLRGADTRTN 60 FAPRISPNCP LAVRIRGLLH HKKVKKQAKP SAAASSSSAA GSSKKNASSS PAPATSNSNS 120 SDSRDSACGG SSSSLSSCDD AMKRVGEVYR PDIAPLAAEE FDSWMFDSAF GQFSPLDGFP 180 ATIDSAVPAA PTLTEEPRPA AAPGEMAEFE RIKVERRISA SLYAINGLQE YFDRVFDASA 240 CDSSLWDLSP LCH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-12 | 3 | 61 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004958111.1 | 3e-97 | ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | K3ZVQ5 | 1e-101 | K3ZVQ5_SETIT; Uncharacterized protein | ||||
STRING | Si030686m | 1e-102 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3900 | 32 | 73 |