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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc06404.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 130aa MW: 14145.1 Da PI: 10.2776 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.7 | 3.4e-19 | 74 | 122 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f+t+e+Aa+a++ a+++++g Zmw_sc06404.1.g00070.1.am.mk 74 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 122 9****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-13 | 72 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.1E-32 | 73 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.23E-22 | 73 | 130 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 73 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 73 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.06E-30 | 74 | 130 | No hit | No description |
PRINTS | PR00367 | 4.9E-11 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MSLLEAASCA RCPAVMEEER ALSPVSDASV DTCSHGSSSS FGPGSLVASP SFDESSGAAS 60 SWKRPRRELK RPAYRGVRMR AWGKWVSEIR EPRKKSRIWL GTFDTPEMAA RAHDVAALAI 120 KGRAAHLNFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-18 | 74 | 130 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315933.1 | 9e-55 | ethylene-responsive transcription factor ERF043 | ||||
Swissprot | Q9SUK8 | 3e-34 | ERF39_ARATH; Ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | A0A194YS75 | 2e-53 | A0A194YS75_SORBI; Uncharacterized protein | ||||
TrEMBL | A0A3L6PNT0 | 1e-53 | A0A3L6PNT0_PANMI; Dehydration-responsive element-binding protein 3-like | ||||
STRING | GRMZM2G041839_P01 | 2e-49 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Publications ? help Back to Top | |||
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