PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc06370.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 859aa MW: 95536.8 Da PI: 5.1088

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06370.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	353.9	2.5e-108	478	850	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 l++ L++cA+a+s+gdl+ a+++L+++++++s +g++++Rla++f+++L+arla+++s++yk+l ++ ts +++ l+a+ Zmw_sc06370.1.g00040.1.am.mk 478 LRTMLIHCAQALSTGDLRGANEMLKQIKQHSSLTGNATERLAHCFAQGLEARLAGTGSQVYKSLMSKCTS---VVDYLKAY 555 5789***********************************************************99999...**** PP GRAS 82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160 klf +s + k+ h+ N++I +av+g++++Hi+ +++++G+QWp Ll+ La+R++gpp++R Tg++ p++g + +le+ Zmw_sc06370.1.g00040.1.am.mk 556 KLFMAASCFKKVKHVFSNRTIADAVAGKSKLHIVEYGVQHGFQWPGLLHFLANREGGPPEVRFTGIDLPQPGfrPAYQLEK 636 *******************************************************************9999** PP GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvv 239 tgerL++ A++++vpf+f++ +a ++e++++e+L+++p+E+l+Vn+ l +l+de+v ++s +rd vLk +++++Pkv+ Zmw_sc06370.1.g00040.1.am.mk 637 TGERLSNCARQFRVPFKFHA-IAAKWETVTPEDLNIDPDEVLVVNCECYLDKLMDETVVVDSpsPRDMVLKNIRNMRPKVF 716 ****************.799*****************************98888779************ PP GRAS 240 vvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 v++ + +++ Fl+rf eal +ysa fd+l+a++pr+++ r +Er +lgr++ nv+acega+r+er et+++W+ r + Zmw_sc06370.1.g00040.1.am.mk 717 VHCVVNGTFGAPFFLTRFREALFFYSAQFDMLDATIPRDNDVRLLIERDILGRSALNVIACEGADRVERPETYKQWQVRNN 797 ***************************************************************************** PP GRAS 321 eaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +aG++++pl+ +++k ++ +++++ + + ++e++ +l++gWk+r L+++S W Zmw_sc06370.1.g00040.1.am.mk 798 RAGLRQLPLRPEIVKLVRDKVKNHYHKDFLLDEDHRWLLQGWKGRVLYAISTW 850 *********************888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.697	452	831	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.6E-106	478	850	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 859 aa Download sequence Send to blast
MGKVEFFGSV NLGGSSLCTC SWRRYHSPDS DRRGDFASWE EESLLHLVYS STVPSADPVA 60 AAVASPFRRL PGSFPLSPPS SRLQSTPEAL IFNSIHVSAH PTSATPLLLA MAATPEDFLG 120 QGGYLAVPEP FSPSVFLDLP PTPRPDGGDD PASSDDLVLP FISRMLMEED IDENFFYQYP 180 DHPALLTLQQ PYAEILSAPS SSSDSATTNT TLTLSSFSDA AEPTWPYDPI ELAQLLRSPP 240 CPDEGLGLHD FTADDDSAVL FDGATPGFEQ ISMVDASPND GGEAIQSSGS WGAAEEEDTK 300 TNIATLPAAD EDHDALASAF FGGHRAVNMD MLNRAFAKGM EEAKKFLPAN SGLFVDLDAT 360 TTEHLPTNSK PLTVCNVKKE EVLVDGLSIF RERSNGRGRK NRHHEDDLEM EIGRSSKLMM 420 QEQEDSDAQE MYREIMSFNV EEFMKRMQDL RIAKDSESEK SSRKGVRGRQ GADEVVDLRT 480 MLIHCAQALS TGDLRGANEM LKQIKQHSSL TGNATERLAH CFAQGLEARL AGTGSQVYKS 540 LMSKCTSVVD YLKAYKLFMA ASCFKKVKHV FSNRTIADAV AGKSKLHIVE YGVQHGFQWP 600 GLLHFLANRE GGPPEVRFTG IDLPQPGFRP AYQLEKTGER LSNCARQFRV PFKFHAIAAK 660 WETVTPEDLN IDPDEVLVVN CECYLDKLMD ETVVVDSPSP RDMVLKNIRN MRPKVFVHCV 720 VNGTFGAPFF LTRFREALFF YSAQFDMLDA TIPRDNDVRL LIERDILGRS ALNVIACEGA 780 DRVERPETYK QWQVRNNRAG LRQLPLRPEI VKLVRDKVKN HYHKDFLLDE DHRWLLQGWK 840 GRVLYAISTW VAEGSNSIF

Sequence ? help Back to Top

Protein Sequence Length: 859 aa Download sequence Send to blast

MGKVEFFGSV NLGGSSLCTC SWRRYHSPDS DRRGDFASWE EESLLHLVYS STVPSADPVA  60
AAVASPFRRL PGSFPLSPPS SRLQSTPEAL IFNSIHVSAH PTSATPLLLA MAATPEDFLG  120
QGGYLAVPEP FSPSVFLDLP PTPRPDGGDD PASSDDLVLP FISRMLMEED IDENFFYQYP  180
DHPALLTLQQ PYAEILSAPS SSSDSATTNT TLTLSSFSDA AEPTWPYDPI ELAQLLRSPP  240
CPDEGLGLHD FTADDDSAVL FDGATPGFEQ ISMVDASPND GGEAIQSSGS WGAAEEEDTK  300
TNIATLPAAD EDHDALASAF FGGHRAVNMD MLNRAFAKGM EEAKKFLPAN SGLFVDLDAT  360
TTEHLPTNSK PLTVCNVKKE EVLVDGLSIF RERSNGRGRK NRHHEDDLEM EIGRSSKLMM  420
QEQEDSDAQE MYREIMSFNV EEFMKRMQDL RIAKDSESEK SSRKGVRGRQ GADEVVDLRT  480
MLIHCAQALS TGDLRGANEM LKQIKQHSSL TGNATERLAH CFAQGLEARL AGTGSQVYKS  540
LMSKCTSVVD YLKAYKLFMA ASCFKKVKHV FSNRTIADAV AGKSKLHIVE YGVQHGFQWP  600
GLLHFLANRE GGPPEVRFTG IDLPQPGFRP AYQLEKTGER LSNCARQFRV PFKFHAIAAK  660
WETVTPEDLN IDPDEVLVVN CECYLDKLMD ETVVVDSPSP RDMVLKNIRN MRPKVFVHCV  720
VNGTFGAPFF LTRFREALFF YSAQFDMLDA TIPRDNDVRL LIERDILGRS ALNVIACEGA  780
DRVERPETYK QWQVRNNRAG LRQLPLRPEI VKLVRDKVKN HYHKDFLLDE DHRWLLQGWK  840
GRVLYAISTW VAEGSNSIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-42	484	851	24	378	Protein SCARECROW
5b3h_D	1e-42	484	851	24	378	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021317198.1	0.0	scarecrow-like protein 34
TrEMBL	A0A3L6PFU1	0.0	A0A3L6PFU1_PANMI; Scarecrow-like protein 34
STRING	Sb05g027740.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297