PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc06367.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 391aa    MW: 42013.1 Da    PI: 10.0234
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc06367.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000297698123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C  Cgk F +   L  H+ +H
  Zmw_sc06367.1.g00060.1.am.mk 76 FRCALCGKAFASYQALGGHMASH 98
                                  89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-1176100IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.57576103IPR007087Zinc finger, C2H2
SMARTSM003550.0177698IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.98E-876150No hitNo description
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
PfamPF139121.3E-7127150IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93128155IPR007087Zinc finger, C2H2
SMARTSM003553.1128150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MTTNRRRPQA RVRAVEYLLP ELVGAITSRG VMRQGEYLSL YLTALAAARR AEHRVHGAPQ  60
PSAPAPVTSS APPLDFRCAL CGKAFASYQA LGGHMASHRK PGTAPPFVQN EDATPSAAGE  120
EGEPRRRHVC TVCRRGFATG QALGGHKRFH YLHGPSVSAS LRTEAGSRAG WFDLNAAPVD  180
CVKGDDEGEE AQSRCGPAKK KQRRGPGKTG RQPWTQDTTG PLLPSALAVA ASLPYPVLVV  240
SASLWCRLLP PTDGTKSYSW FQILNDSMLC HLFPCVLGWL VDVDPNHVAP TQIFVPVSER  300
ELQYSGHSPA PLRLCEMPNL PIAAAATTNP PFLAAQRTKT IMRTQRLTID AQLGTANFSG  360
PFSGWSGLQL RIVLALVPAS VTGGVHSGLR K
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148981718