PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc06343.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

SBP

Protein Properties

Length: 428aa MW: 46475.4 Da PI: 6.059

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc06343.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	47.7	4.1e-15	5	35	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l+efDe+krsCrrrLa+hn+rrrk+q+ Zmw_sc06343.1.g00050.1.es.mkhc 5 RFHLLEEFDEGKRSCRRRLAGHNRRRRKTQP 35 9***************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	14.563	1	33	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.8E-4	5	20	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	8.6E-8	5	32	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.69E-12	5	37	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MILYRFHLLE EFDEGKRSCR RRLAGHNRRR RKTQPDISFG GAASIEDKVS NYLLLSLLGI 60 CANLISGGTE NSNGQELLSN LLKNLGSVAK SLELKELSKL LEACQSLQNG SNAGTSGTAN 120 ALANNSAAEA AGPSNSNLLF MNGSQCGQAS SSAIPVQQKA TMVANPEPRA CKIKDFDLND 180 TCDYIEGFQN GQEGSPTPAF KAADSPNCPS WMHQNSTQIP PQTSGNSDST STQSLSSSNG 240 DAQCRTDKIV FKLFEKVPSD LPPVLRSQIL GWLSSSPTDI ESYIRPGCII LTVYVRLVES 300 AWRALLNSSS DNFWASGLVF VMVRHQLAFM YNGQIMLDKR LAPSSFHYCK ILSVRPVAVP 360 YSAAVNFRIE GFNLVSASSR LICSFEGCCI FQEDTAAITD DAELDDRETE CLSFCCPAPG 420 SRGRGFIE

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MILYRFHLLE EFDEGKRSCR RRLAGHNRRR RKTQPDISFG GAASIEDKVS NYLLLSLLGI  60
CANLISGGTE NSNGQELLSN LLKNLGSVAK SLELKELSKL LEACQSLQNG SNAGTSGTAN  120
ALANNSAAEA AGPSNSNLLF MNGSQCGQAS SSAIPVQQKA TMVANPEPRA CKIKDFDLND  180
TCDYIEGFQN GQEGSPTPAF KAADSPNCPS WMHQNSTQIP PQTSGNSDST STQSLSSSNG  240
DAQCRTDKIV FKLFEKVPSD LPPVLRSQIL GWLSSSPTDI ESYIRPGCII LTVYVRLVES  300
AWRALLNSSS DNFWASGLVF VMVRHQLAFM YNGQIMLDKR LAPSSFHYCK ILSVRPVAVP  360
YSAAVNFRIE GFNLVSASSR LICSFEGCCI FQEDTAAITD DAELDDRETE CLSFCCPAPG  420
SRGRGFIE

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00603	PBM	Transfer from AT2G47070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793312.1	0.0	squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	A0A0A9REY0	0.0	A0A0A9REY0_ARUDO; Uncharacterized protein
STRING	Pavir.J01500.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]